Basic MSc internship guidelines

basic-skills.md

1. Powershell vs git-bash on windows
   • ls vs dir, ...
2. Learn unix commands
   • cd, ls, ls -l, .bashrc (for alias), ln -s
3. Learng git commands
   • git status, git commit, git push, git branch
4. Learn how to setup SSH keys
   • ssh-keygen, setting keys in web UI of git (github, gitlab, bitbucket etc) system, .ssh/authorized_keys
5. VSCode/Pycharm setup
   • debugger
   • SSH via editor into compute cluster
6. conda
   • installing, environments, setting up within editor

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1. Getting access to university/orgaization compute clusters

deeplearning-skills.md

1. Basics of dataloader
   • efficiency of dataloader with pyinstrument
2. Basic of training step
3. Logging to tensorboard/wandb
4. Tracking
5. SLURM commands
   • sbatch, sinfo, squeue, slurm-viewer

medicalimageprocessing-skills.md

1. Views: axial, coronal, sagittal
2. Resampling
3. RAS vs LPS views