prerakmody

{
    "version": "0.2.0",
    "configurations": [
        {
            "name": "Python: cupdate",
            "type": "debugpy",
            "request": "launch",
            "python": "C:\\Users\\Prerak\\AppData\\Local\\miniconda3\\python.exe",
            "program": "C:\\Users\\Prerak\\Documents\\file.py",
            "args": [

prerakmody

1. 3D Slicer is often installed in C:\Users\<username>\AppData\Local\slicer.org\Slicer.x.y
   • within this folder checkout slicer.org\Slicer-ABCDE (a configuration file)

[Extensions]
LastServerAPI=Girder_v1
ManagerEnabled=true
ServerUrl=https://slicer-packages.kitware.com
FrontendServerUrl=https://extensions.slicer.org
InstallPath=slicer.org/Extensions-33241

prerakmody

1. Powershell vs git-bash on windows
   • ls vs dir, ...
2. Learn unix commands
   • cd, ls, ls -l, .bashrc (for alias), ln -s
3. Learng git commands
   • git status, git commit, git push, git branch
4. Learn how to setup SSH keys
   • ssh-keygen, setting keys in web UI of git (github, gitlab, bitbucket etc) system, .ssh/authorized_keys
5. VSCode/Pycharm setup

• debugger

prerakmody

1. Status/Start/Restart
   • systemctl {status, start, stop, restart} docker.service
2. Cleanup cache
   • docker system prune -a
3. Config
   • sudo vim /etc/default/docker
4. docker0 interface
   • ifconfig | grep docker0 (docker0 is Docker's bridge network)
   • Only if firewalls are installed

• First: check for all services: sudo systemctl list-units --type=service

prerakmody

#!/bin/bash

# Function to check the status of a service
check_service_status() {
    local service=$1
    while true; do
        sudo systemctl status "$service" --no-pager
        if [ $? -eq 0 ]; then
            break
        fi

prerakmody

1 - Install gping

0. Launch Powershell in Administrator mode
1. First install chocolatey
2. Install gping: choco install gping

1.1 - Sample command

• gping google.com reddit.com <local-server>

2 - Make it a powershell alias

1. notepad $PROFILE

prerakmody

"""
>> pip install uv # OR https://docs.astral.sh/uv/getting-started/installation/
>> uv run -p 3.11 uv-monai-torchsummary.py
"""

# /// script
# requires-python = ">=3.11"
# dependencies = [
#     "monai==1.3.2",
#     "torchsummary==1.5.1",

prerakmody

{
    "DicomWeb" : 
        { 
            "Enable" : true,         // Whether DICOMweb support is enabled 
            "Root" : "/dicom-web/",  // Root URI of the DICOMweb API (for QIDO-RS, STOW-RS and WADO-RS) 
            "EnableWado" : true,     // Whether WADO-URI (aka. WADO) support is enabled 
            "WadoRoot" : "/wado",    // Root URI of the WADO-URI (aka. WADO) API 
            "Host" : "localhost:8042",    // Hard-codes the name of the host for subsequent WADO-RS requests 
            "Ssl" : false,            // Whether HTTPS should be used for subsequent WADO-RS requests 
            "Servers" : { 

prerakmody

import skimage
import skimage.morphology
import voxynth as voxynth # https://github.com/dalcalab/voxynth
import numpy as np
import matplotlib.pyplot as plt

def getContourScribbleForBinarySlice(mask, show=False):
    """
    Params
    ------

prerakmody

import torchDataloader   
import myDataloader

import pdb
import copy
import time
import tqdm
import pprint
import traceback
import numpy as np