sbamin

bioinformatics-for-beginners

MOOC:

Free

• https://www.rstudio.com/online-learning/
• Introductory classes at https://rafalab.github.io/pages/teaching.html

Paid:

Svidro

Collections of scripts harvested mainly from Pete, but also picked up from the forums
If you are starting with 0.2.0m4+ START HERE: https://petebankhead.github.io/qupath/2019/08/21/scripting-in-v020.html

TOC

Access objects in other project images.groovy - in later versions of 0.2.0M#, access the hierarchies of other images

Access other project images or data.groovy

Access project metadata.groovy - interact with user defined, per image metadata. Useful for sorting projects.

angelovangel

# the aim is to use the 'drc' package to fit models to data and then extract the data and use for plotting in ggplot
# the data could be growth curves, dose-response, Michaelis-Menten etc.
# here, the S.alba data from drc is used for dose-response

library(tidyverse)
library(broom)
library(drc)
library(modelr)
attach(S.alba) # the data used in this gist
library(egg) 

slowkow

"""
VCF.py
Kamil Slowikowski
October 30, 2013

Read VCF files. Works with gzip compressed files and pandas.

Note: This module ignores the genotype columns because
      I didn't need them at the time of writing.