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tiagochst/part_of_docker_file

Created July 24, 2019 18:38
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part_of_docker_file
RUN apt-get update
RUN apt install -y tzdata font-manager
RUN apt-get install -y libz-dev
RUN conda config --add channels bioconda
RUN conda config --add channels conda-forge
RUN conda install --quiet --yes -c anaconda curl
RUN conda install --quiet --yes -c r r-irkernel
RUN conda install --quiet --yes -c r r-devtools
RUN conda install --quiet --yes -c conda-forge r-vegan
RUN conda install --quiet --yes -c bioconda bioconductor-karyoploter
RUN conda install --quiet --yes -c bioconda bioconductor-txdb.hsapiens.ucsc.hg38.knowngene
RUN conda install --quiet --yes -c bioconda bioconductor-org.hs.eg.db
RUN R -e 'options(unzip = "internal");source("https://bioconductor.org/biocLite.R");biocLite("BiocInstaller");devtools::install_github(c("tiagochst/ELMER.data", "BioinformaticsFMRP/TCGAbiolinks","tiagochst/ELMER","jokergoo/ComplexHeatmap","bernatgel/karyoploteR"))'
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