hackathon.yaml

name: 'Pathinder'
customWebsiteImage: "ghcr.io/loculus-project/website:microbioinfo-hackathon"
organisms:
  salmonella:
    schema:
      organismName: 'Salmonella'
      image: 'https://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/SalmonellaNIAID.jpg/286px-SalmonellaNIAID.jpg'
      metadata:
        - name: location
          type: string
          initiallyVisible: true
          displayName: Location
        - name: collectionDate
          type: date
          initiallyVisible: true
          displayName: Collection date
        - name: profileHash
          type: string
          initiallyVisible: false
          displayName: Profile hash
          hideOnSequenceDetailsPage: true
      website:
        tableColumns:
          - submissionId
          - location
          - collectionDate
          - groupName
        defaultOrder: descending
        defaultOrderBy: collectionDate
    preprocessing:
      - version: 1
        image: ghcr.io/loculus-project/preprocessing-nextclade
        args:
          - 'prepro'
        configFile:
          log_level: DEBUG
          genes: []
          batch_size: 100
    referenceGenomes:
      nucleotideSequences:
        - name: 'main'
          sequence: 'NNN' # We are not performing alignment here, so this sequence doesn't matter
      genes: []
createTestAccounts: true
secrets:
  smtp-password:
    type: sealedsecret
    clusterWide: "true"
    encryptedData:
      secretKey: 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
  orcid:
    type: sealedsecret
    clusterWide: "true"
    encryptedData:
      orcidSecret: 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
disableIngest: true
disableEnaSubmission: true
reduceResourceRequest: true
previewDocs: false
robotsNoindexHeader: true