Achim Randelhoff poplarShift

poplarShift / autossh

Last active February 4, 2025 13:47

Automatically enter OATH and password for ssh authentication

	#!/bin/bash

	# This is assuming you have the password accessible via `pass` (1st line)
	# and the OATH secret as the second word of a line starting with "Secret: "

	# can't pass an EOF directly because that would be hogging stdin (from ssh)
	script=$(cat <<EOF
	spawn ssh $@
	expect "oath"
	send -- "$(oathtool --totp -b $(pass PASSWORDNAME \|grep Secret: \| cut -d ' ' -f2))\r"

poplarShift / citefilter.py

Created November 4, 2023 11:55

Parse markdown-style citations in .docx using pandocfilters

	#!/usr/bin/env python

	"""
	Pandoc filter to convert text of form [@foo,@bar] to citations.
	Handy for e.g. word documents...
	"""

	import re
	from pandocfilters import toJSONFilter, Str

poplarShift / SLURMCluster_vs_Singularity.ipynb

Created May 6, 2022 14:10 — forked from willirath/SLURMCluster_vs_Singularity.ipynb

Dask-Jobqueue SLURMCluster with Singularity

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poplarShift / odv2python.py

Created December 3, 2018 17:09

Reading ODV ("Ocean Data View") data formats into python/pandas

	# CASE 1: 'ODV.nc' exported from ODV.
	import xarray as xr

	ds = xr.open_dataset('ODV.nc')
	ds.rename({v: ds[v].long_name for v in ds if hasattr(ds[v], 'long_name')})


	# CASE 2: 'ODV.txt' in the tabular ODV text format.
	import pandas as pd