Last active
February 19, 2024 14:21
-
-
Save mschauer/b8566ba25e336522ad7b27e98352e605 to your computer and use it in GitHub Desktop.
Bayes ball
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
using CausalInference, Graphs | |
V = [:U, :T, :P, :O] | |
ι = Dict(v=>i for (i,v) in enumerate(V)) | |
g = digraph([1=>3, 2=>3, 3=>4, 2=>4, 1=>4]) | |
# Can estimate total effect T=>O without observing U? | |
u = ι[:T] | |
v = ι[:O] | |
∅ = Set{Int}() | |
observed = 2:4 | |
C = collect(list_covariate_adjustment(g, u, v, ∅, observed)) | |
∅ ∈ C | |
# No adjustment needed. | |
# What happens if we condition on P? | |
u = ι[:T] | |
C = [ι[:P]] | |
V2 = [:U, :U′, :T, :T′, :P, :P′, :O, :O′] # bayesball_graph has each vertex twice | |
g2 = CausalInference.bayesball_graph(g, u, C) | |
g2_sub, vmap = induced_subgraph(g2, findall(degree(g2) .> 0)) # drop degree 0 vertices | |
using GraphMakie, GLMakie, NetworkLayout | |
fig = Figure(resolution=(500, 500)) | |
ax1 = Axis(fig[1,1]) | |
hidespines!(ax1) | |
hidedecorations!(ax1) | |
graphplot!(ax1, g; layout=Stress(), arrow_shift = :end, ilabels=V, arrow_size=25, ilabels_fontsize = 30) | |
fig | |
ax2 = Axis(fig[1,2]) | |
hidespines!(ax2) | |
hidedecorations!(ax2) | |
graphplot!(ax2, g2_sub; kwargs_pdag_graphmakie(g2_sub; ilabels=V2[vmap])...) | |
fig | |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Left: DAG. Right: When we condition on P, then a "Bayes ball" started in T can reach O directly, or via the opened collider path T-P-U-O. See https://twitter.com/MoritzSchauer/status/1758203552218919219