vector_deconvolution.feature

  Feature: Vector Pool Deconvolution Workflow
    As a lab technician or supervisor
    I want to manage vector pool testing through deconvolution
    So that I can identify which individual organisms in a pool carry a pathogen

    Background:
      Given a vector order exists with accession number "DEV01260000000000001"
      And the order contains a pool of 6 mosquitoes
      And the pool panel includes "Malaria Parasite Detection" and "Dengue Virus Detection"
      And the lab technician is logged in with RESULTS role

    # ─────────────────────────────────────────────────────────────
    # RESULTS ENTRY
    # ─────────────────────────────────────────────────────────────

    Scenario: Pool-level tests display as pool cluster in Results Entry before confirmation
      Given pool-level results have NOT been confirmed for any vector
      When the technician opens Results Entry for "DEV01260000000000001"
      Then "Malaria Parasite Detection" is displayed as "Pool of 6 Mosquito"
      And "Dengue Virus Detection" is displayed as "Pool of 6 Mosquito"

    Scenario: Confirmed test displays as flat individual rows in Results Entry
      Given "Malaria Parasite Detection" result has been entered as Positive
      And "Malaria Parasite Detection" has been confirmed for all 6 vectors
      When the technician opens Results Entry for "DEV01260000000000001"
      Then "Malaria Parasite Detection" displays as 6 individual flat rows
      And no "Pool of 6" label appears for "Malaria Parasite Detection"
      And "Dengue Virus Detection" still displays as "Pool of 6 Mosquito"

    Scenario: Partially confirmed pool shows mixed display
      Given "Malaria Parasite Detection" has been confirmed for all 6 vectors
      And "Dengue Virus Detection" has NOT been confirmed
      When the technician opens Results Entry for "DEV01260000000000001"
      Then "Malaria Parasite Detection" shows as 6 individual flat rows
      And "Dengue Virus Detection" shows as "Pool of 6 Mosquito"

    # ─────────────────────────────────────────────────────────────
    # CONFIRMATION BANNER
    # ─────────────────────────────────────────────────────────────

    Scenario: Partial confirmation banner appears after first test is confirmed
      Given "Malaria Parasite Detection" has been entered as Positive
      And "Dengue Virus Detection" has been entered as Positive
      When the technician confirms "Malaria Parasite Detection" for all 6 vectors
      Then a green "Results Partially Confirmed" banner appears on the lot
      And the banner shows "✓ Malaria Parasite Detection: Positive"
      And "Dengue Virus Detection" is NOT listed in the banner

    Scenario: Banner updates when second test is confirmed
      Given "Malaria Parasite Detection" has already been confirmed for all 6 vectors
      And "Dengue Virus Detection" has been confirmed for all 6 vectors
      Then the green banner shows both:
        | Test                       | Result   |
        | Malaria Parasite Detection  | Positive |
        | Dengue Virus Detection      | Positive |

    # ─────────────────────────────────────────────────────────────
    # VALIDATION SCREEN
    # ─────────────────────────────────────────────────────────────
  
    Scenario: Validation screen shows pool-level analyses before confirmation
      Given "Malaria Parasite Detection" has been entered as Positive at pool level
      And no confirmation has been performed
      When the validator searches "DEV01260000000000001" on the Validation screen
      Then "Malaria Parasite Detection" appears as a pool-level row awaiting sign-off
      And no individual member-level rows are shown for that test

    Scenario: Validation screen shows individual member analyses after confirmation
      Given "Malaria Parasite Detection" has been validated and confirmed for all 6 vectors
      When the validator searches "DEV01260000000000001" on the Validation screen
      Then 6 individual rows for "Malaria Parasite Detection" appear for sign-off
      And the pool-level "Malaria Parasite Detection" row is no longer shown

    Scenario: Validator can accept a pool-level result without errors
      Given "Dengue Virus Detection" has been entered as Positive at pool level
      When the validator accepts "Dengue Virus Detection" on the Validation screen
      Then the analysis status becomes Finalized
      And no system error occurs

    # ─────────────────────────────────────────────────────────────
    # DECONVOLUTION WORKLIST
    # ─────────────────────────────────────────────────────────────

    Scenario: Deconvolution worklist shows all pools by default
      Given multiple pools exist with statuses PENDING, IN_PROGRESS, and COMPLETE
      When the supervisor opens the Deconvolution worklist
      And the status filter is set to "All"
      Then pools with status PENDING are visible
      And pools with status IN_PROGRESS are visible
      And pools with status COMPLETE are visible

    Scenario: Deconvolution worklist can be filtered by status
      Given multiple pools exist with statuses PENDING, IN_PROGRESS, and COMPLETE
      When the supervisor filters by "Pending"
      Then only PENDING pools are shown
      And IN_PROGRESS and COMPLETE pools are not shown

    Scenario: Deconvolution worklist can filter to show only completed pools
      Given multiple pools exist with different statuses
      When the supervisor filters by "Complete"
      Then only COMPLETE pools are shown

    # ─────────────────────────────────────────────────────────────
    # SPLIT MODAL — TEST SELECTION
    # ─────────────────────────────────────────────────────────────

    Scenario: Split modal shows only unconfirmed tests pre-checked
      Given "Malaria Parasite Detection" has been confirmed for all 6 vectors
      And "Dengue Virus Detection" has NOT been confirmed
      When the technician opens the split panel for the pool
      Then "Dengue Virus Detection" appears as a pre-checked checkbox
      And "Malaria Parasite Detection" does NOT appear in the checklist
        — it is already confirmed for every vector

    Scenario: Split modal shows available panel tests that are not yet on the pool
      Given the pool panel includes tests not yet assigned to the pool
      When the technician opens the split panel
      Then an "Add from panel" section appears
      And it lists panel tests that are not currently on the pool
      And those tests appear as unchecked checkboxes

    Scenario: Technician can exclude a test from sub-pools by unchecking it
      Given "Dengue Virus Detection" appears pre-checked in the split modal
      When the technician unchecks "Dengue Virus Detection"
      And saves the split
      Then sub-pools do NOT inherit "Dengue Virus Detection"

    Scenario: Technician can add a panel test to sub-pools during splitting
      Given "Zika Virus Detection" appears in the "Add from panel" section
      And "Zika Virus Detection" is currently unchecked
      When the technician checks "Zika Virus Detection"
      And saves the split
      Then each sub-pool receives a "Zika Virus Detection" analysis

    Scenario: Split with default selection carries all unconfirmed tests to sub-pools
      Given "Dengue Virus Detection" and "Zika Virus Detection" are unconfirmed
      And the technician opens the split panel without changing any selections
      When the technician saves the split into 2 sub-pools of 3
      Then each sub-pool inherits "Dengue Virus Detection"
      And each sub-pool inherits "Zika Virus Detection"
      And "Malaria Parasite Detection" (already confirmed) is NOT duplicated

    # ─────────────────────────────────────────────────────────────
    # QA REVIEW PAGE
    # ─────────────────────────────────────────────────────────────

    Scenario: QA review page shows panel tests grouped under their panel name
      Given the pool is ordered with a panel "Vector Mosquito Panel"
      And the panel contains "Malaria Parasite Detection" and "Dengue Virus Detection"
      When the supervisor views the QA review page for this order
      Then "Vector Mosquito Panel" panel header is visible
      And "Malaria Parasite Detection" is listed indented under it
      And "Dengue Virus Detection" is listed indented under it

    # ─────────────────────────────────────────────────────────────
    # ORDER ENTRY — POOL VIEW
    # ─────────────────────────────────────────────────────────────

    Scenario: Order page groups vectors by pool after fan-out
      Given a vector order with a pool of 6 mosquitoes has been submitted
      When the technician opens the order's Enter page
      Then the page shows "Pool of 6 Mosquitoes" as a grouped tile
      And individual mosquito specimens are not listed separately

    # ─────────────────────────────────────────────────────────────
    # CONFIRM RESULTS — PER-RESULT
    # ─────────────────────────────────────────────────────────────

    Scenario: Confirm buttons appear per-test in an expandable sub-row
      Given results have been entered for "Malaria Parasite Detection" and "Dengue Virus Detection"
      And neither test has been confirmed
      When the technician clicks "Review results (2)" on the pool row
      Then a sub-row expands showing:
        | Test                       | Result   | Action    |
        | Malaria Parasite Detection  | Positive | [Confirm] |
        | Dengue Virus Detection      | Positive | [Confirm] |

    Scenario: Confirming one test does not confirm the other
      Given the "Review results" sub-row is open
      When the technician clicks "Confirm" for "Malaria Parasite Detection"
      Then "Malaria Parasite Detection" is confirmed for all 6 vectors
      And the "Confirm" button for "Dengue Virus Detection" remains visible