Created
June 5, 2016 18:41
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Code to reproduce https://mbq.me/blog/augh-roc
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#AUROC calculation code | |
auroc<-function(score,cls){ | |
n1<-sum(!cls); sum(cls)->n2; | |
U<-sum(rank(score)[!cls])-n1*(n1+1)/2; | |
return(1-U/n1/n2); | |
} | |
#... as a cryptic one-liner | |
auroc1l<-function(score,cls) | |
mean(rank(score)[cls]-1:sum(cls))/sum(!cls) | |
#... caTools-like version | |
colAuroc<-function(score,cls) | |
colMeans(apply(score,2,rank)[cls,]-1:sum(cls))/sum(!cls) | |
#AUROC significance | |
pAuroc<-function(auroc,nx,ny){ | |
W<-round((1-auroc)*nx*ny); | |
pwilcox(W,nx,ny) | |
} | |
#Minimal significant AUROC (p=p), for a given nx, ny | |
qAuroc<-function(nx,ny,p=.05){ | |
ca<-1-(qwilcox(p,nx,ny)-1)/nx/ny | |
#Even AUROC=1 won't be significant | |
ca[!is.finite(ca)]<-NaN; | |
ca[ca>1]<-NaN; | |
ca | |
} |
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source('auroc.R') | |
library(gpclib) | |
mergeSeries<-function(s){ | |
if(length(s)<2) return(s); | |
ans<-as(s[[1]],"gpc.poly");s[-1]->s; | |
for(ss in s) ans<-union(ans,as(ss,"gpc.poly")) | |
return(ans@pts) | |
} | |
optimiseRects<-function(xmin,ymin,xmax,ymax,cls){ | |
lapply(1:length(xmin),function(i) | |
cbind( | |
c(xmin[i],xmax[i],xmax[i],xmin[i]), | |
c(ymin[i],ymin[i],ymax[i],ymax[i]) | |
))->polys; | |
lapply(split(polys,cls),mergeSeries) | |
} | |
makePlot<-function(maxN=110,maxNt=21){ | |
do.call(rbind,lapply(c(7:maxN),function(N){ | |
M<-1:floor(N/2); | |
qAuroc(N-M,M)->ca; | |
data.frame( | |
N=N, | |
fra=M/N, | |
fram=(M-1/2)/N, | |
frap=(M+1/2)/N, | |
ca=ca)[is.finite(ca),]; | |
}))->QQ; | |
QQ$aurocClass<-cut(QQ$ca,c(.5,.55,.6,.65,.7,.75,.8,.85,.9,.95,1,Inf),right=FALSE) | |
QQ$aurocClass<-factor(QQ$aurocClass); | |
acl<-levels(QQ$aurocClass); | |
cc<-rev( | |
c("#000000","#00ccff","#00d4aa","#80ff80","#ffcc00","#ff7f2a","#ff2a2a", | |
"#d40000","#5500d4","#b380ff","#ff00cc")); | |
plot(.2,1,type='n', | |
xlim=c(0,.55),ylim=c(7,maxN), | |
log="y", | |
xlab="Fraction of the smaller class", | |
ylab="Number of objects", | |
main="Minimal AUROC significant at p=.05"); | |
abline(v=(1:10)/20); | |
abline(h=7:maxNt) | |
optimiseRects(QQ$fram,QQ$N-.5,QQ$frap,QQ$N+.5,QQ$aurocClass)->polys; | |
lapply(names(polys),function(pn) | |
lapply(polys[[pn]],polygon,col=cc[which(acl==pn)])); | |
QQ[QQ$N<=maxNt,]->QQ; | |
legend("bottomleft",fill=cc,acl,bg="white") | |
} |
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