mbarnkob

MD at Odense University Hospital. Post.doc at University of Southern Denmark & University of Oxford.

mbarnkob / 2016-Hazard-ratio-in-ggplot2

Created October 31, 2016 11:05

	### Visualization of hazard ratio's in TCGA data based on a single gene
	### =================

	# Goal: To visualize survival data (deaths) based on the expression level of a single gene
	# as either high or low, and the hazard ratio between those two.

	# Date: 2016-10-30
	# Author: Mike Barnkob, www.mikebarnkob.dk

	### Data

mbarnkob / 2016-Nature-Journal-Scrape-Capti.R

Created February 13, 2016 21:58

A script to scrape Nature Immunology "news and views" text files and convert them to a format, # thats easier to listen to in Capti (https://www.captivoice.com/capti-site/). More info here: http://mikebarnkob.dk/2016/an-r-script-for-scraping-news-from-nature-journals-to-capti-narrator

	# Script to convert Nature articles into Capti text files

	# A script to scrape Nature Immunology "news and views" text files and convert them to a format,
	# thats easier to listen to in Capti (https://www.captivoice.com/capti-site/). Does the following:

	# 1. Add "Title " in front of title, "Author " in front of author, "Abstract " in front of abstract, "Text " in front of text
	# 2. Removes references and website links
	# 3. Remove figure texts.

	# Version 1

mbarnkob / 2014-Barnkob-Frontiers_in_Genetics.R

Last active January 2, 2016 03:03

R code for analysing half-life data and Monte Carlo analysis used in Barnkob et al, Frontiers in Genetics, 2014.

	#CODE FOR Barnkob et al, Frontiers in Genetics, 2014 article
	#Mike Barnkob, 2014.
	#www.mikebarnkob.dk

	#ANALYSIS of mRNA-PROTEIN HALF-LIFE DATA
	#=======================================

	#Info and packages
	#===========

mbarnkob / RArticleNetwork.R

Last active March 12, 2018 17:46

R code for generating a network of referring articles from pubmed. More info here: http://mikebarnkob.dk/2015/generating-an-article-network-using-rentrez-and-igraph-in-r/

	#Article Network ver 2
	#============================

	# This program will scrape all citing articles surrounding one main article and
	# create: 1) a list of most cited articles, 2) lists of main authors, 3) network of articles
	# Mike Barnkob, December 28th 2015.
	# www.mikebarnkob.dk

	#Background and references
	#1. https://cran.r-project.org/web/packages/rentrez/vignettes/rentrez_tutorial.html#advanced-counting