mathieuboudreau

mathieuboudreau

#!/usr/bin/env bash
set -e

cd /MATLAB/extern/engines/python/
python3 setup.py install

pip3 install octave_kernel sos==0.17.7 sos-notebook==0.17.2 sos-python==0.9.12.1 sos-bash==0.12.3 sos-matlab==0.9.12.1 sos-ruby==0.9.15.0 sos-sas==0.9.12.3 sos-julia==0.9.12.1 sos-javascript==0.9.12.2 sos-r==0.9.12.2 scipy plotly==3.10.0 dash dash_core_components dash_html_components dash_dangerously_set_inner_html dash-renderer flask imatlab;

python3 -mimatlab install
python3 -m sos_notebook.install

mathieuboudreau

FROM registry.codeocean.com/codeocean/matlab:2019a-ubuntu18.04

ARG DEBIAN_FRONTEND=noninteractive
ARG MLM_LICENSE_FILE

RUN apt-get update \
    && apt-get install -y --no-install-recommends \
        bsdtar=3.2.2-3.1ubuntu0.6 \
        build-essential=12.4ubuntu1 \
        cmake=3.10.2-1ubuntu2.18.04.1 \

mathieuboudreau

# Make sure to install openpyxl and pandas first using "pip install ..."
import openpyxl
import pandas as pd

x = np.array([], dtype=[
                        ('x0', 'f4'),
                        ('y0', 'f4'),
                        ('gratio','f4'),
                        ('axon_area','f4'),
                        ('myelin_area','f4'),

mathieuboudreau

function combinedReports = mocov_combine(dirPath, outputFileName)
%MOCOV_COMBINE Combine MOcov JSON coverage reports.
%
%   dirPath: (string) Directory containing MOcov JSON coverage reports.
%   
%   (optional) 
%   outputFileName: (string) Filename of combined reports JSON file – saved in dirPath.
%
%   External dependencies: JSONlab – https://github.com/fangq/jsonlab