jonathanking

REMARK  7l8n_A
SEQRES   1 A  151  GLN GLN LEU SER ASP ASP GLU LYS LEU VAL ALA ALA PHE          
SEQRES   2 A  151  VAL LYS ALA VAL ALA TYR MET SER PRO ARG LYS ILE GLY          
SEQRES   3 A  151  ALA LEU VAL SER ILE GLU GLU THR GLN THR LEU ARG GLU          
SEQRES   4 A  151  TYR ILE ALA THR GLY ILE PRO LEU ASP ALA ASP ILE SER          
SEQRES   5 A  151  GLY GLU LEU LEU ILE ASN ILE PHE ILE PRO ASN THR PRO          
SEQRES   6 A  151  LEU HIS ASP GLY ALA VAL ILE VAL GLU GLY ASN LYS ILE          
SEQRES   7 A  151  ALA VAL SER CYS ALA TYR LEU PRO LEU SER GLU SER SER          
SEQRES   8 A  151  HIS ILE SER LYS GLU PHE GLY THR ARG HIS ARG ALA ALA          
SEQRES   9 A  151  ILE GLY LEU SER GLU ALA SER ASP ALA PHE THR PHE VAL          

jonathanking

import prody
import sidechainnet as scn
from sidechainnet.utils.download import get_resolution_from_pdbid

def from_pdb(filename, pdbid="", include_resolution=False):
    """Create a SCNProtein from a PDB file. Warning: does not support gapped proteins!!
    Args:
        filename (str): Path to existing PDB file.
        pdbid (str): 4-letter string representing the PDB Identifier.
        include_resolution (bool, default=False): If True, query the PDB for the protein

jonathanking

import os
from tqdm import tqdm
from tqdm.utils import _unicode, disp_len
​
_TQDM_STATUS_EVERY_N = 2
​
if "SLURM_JOB_ID" in os.environ:
    def status_printer(self, file):
        """
        Manage the printing and in-place updating of a line of characters.

jonathanking

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