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March 16, 2020 12:42
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| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:Starting | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:Removing old file '/var/lib/fah/work/00/logfile_01-20200315-031613.txt' | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:Running FahCore: /opt/fah/FAHCoreWrapper /var/lib/fah/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7 -dir 00 -suffix 01 -version 705 -lifeline 173424 -checkpoint 15 -np 10 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:Started FahCore on PID 175049 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:Core PID:175053 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:FahCore 0xa7 started | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:*********************** Log Started 2020-03-16T12:41:31Z *********************** | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:************************** Gromacs Folding@home Core *************************** | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Type: 0xa7 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Core: Gromacs | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Args: -dir 00 -suffix 01 -version 705 -lifeline 175049 -checkpoint 15 -np | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: 10 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:************************************ CBang ************************************* | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Date: Nov 5 2019 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Time: 06:06:57 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Branch: master | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Compiler: GNU 8.3.0 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Platform: linux2 4.19.0-5-amd64 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Bits: 64 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Mode: Release | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:************************************ System ************************************ | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: CPU: Intel(R) Core(TM) i7-8700K CPU @ 3.70GHz | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: CPU ID: GenuineIntel Family 6 Model 158 Stepping 10 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: CPUs: 12 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Memory: 31.30GiB | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:Free Memory: 21.47GiB | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Threads: POSIX_THREADS | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: OS Version: 5.5 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:Has Battery: false | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: On Battery: false | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: UTC Offset: -3 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: PID: 175053 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: CWD: /var/lib/fah/work | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:******************************** Build - libFAH ******************************** | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Version: 0.0.18 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Author: Joseph Coffland <[email protected]> | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Copyright: 2019 foldingathome.org | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Homepage: https://foldingathome.org/ | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Date: Nov 5 2019 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Time: 06:13:26 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Revision: 490c9aa2957b725af319379424d5c5cb36efb656 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Branch: master | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Compiler: GNU 8.3.0 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Options: -std=c++11 -O3 -funroll-loops -fno-pie | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Platform: linux2 4.19.0-5-amd64 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Bits: 64 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: Mode: Release | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:************************************ Build ************************************* | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: SIMD: avx_256 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:******************************************************************************** | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:Project: 14524 (Run 252, Clone 0, Gen 6) | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:Unit: 0x0000000880fccb0a5e459bb041761086 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:Reading tar file core.xml | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:Reading tar file frame6.tpr | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:Digital signatures verified | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:Calling: mdrun -s frame6.tpr -o frame6.trr -x frame6.xtc -cpt 15 -nt 10 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:Steps: first=1500000 total=250000 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR: | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:------------------------------------------------------- | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902 | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR: | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:Fatal error: | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:There is no domain decomposition for 10 ranks that is compatible with the given box and a minimum cell size of 1.4227 nm | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors | |
| Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:------------------------------------------------------- | |
| Mar 16 09:41:36 calvin FAHClient[173424]: 12:41:36:WU00:FS00:0xa7:WARNING:Unexpected exit() call | |
| Mar 16 09:41:36 calvin FAHClient[173424]: 12:41:36:WU00:FS00:0xa7:WARNING:Unexpected exit from science code | |
| Mar 16 09:41:36 calvin FAHClient[173424]: 12:41:36:WU00:FS00:0xa7:Saving result file ../logfile_01.txt | |
| Mar 16 09:41:36 calvin FAHClient[173424]: 12:41:36:WU00:FS00:0xa7:Saving result file md.log | |
| Mar 16 09:41:36 calvin FAHClient[173424]: 12:41:36:WU00:FS00:0xa7:Saving result file science.log | |
| Mar 16 09:41:36 calvin FAHClient[173424]: 12:41:36:WU00:FS00:FahCore returned: INTERRUPTED (102 = 0x66) |
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