Created
February 6, 2019 09:49
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Sample data and minimalistic code to show analysis of psychophysics data. Data are from Muller-Lyer illusion experiment, where people compare a length of the line with a standard (featuring Muller-Lyer endings).
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# example of fitting psychophysic curve to data are from one subject | |
# data from Muller-Lyer illusion, subjects are supposed to compare stimulus to | |
# standard (length = 100) | |
# columns: | |
# - length - length of stimulus line | |
# - pp - proportion of saying "longer" | |
# - id | |
# - N - is 10 for each value of length | |
# - k - count of saying "longer" (k = pp * N) | |
library(dplyr) | |
library(ggthemes) | |
library(quickpsy) | |
db <- | |
structure(list(length = c( | |
85, 88, 91, 94, 97, 100, 103, 106, 109, | |
112, 115, 118, 121, 124, 127 | |
), pp = c( | |
0, 0, 0, 0.1, 0, 0.1, 0.1, | |
0.3, 0.5, 0.5, 0.8, 0.9, 0.9, 1, 1 | |
), id = c( | |
"subject_1", "subject_1", | |
"subject_1", "subject_1", "subject_1", "subject_1", "subject_1", | |
"subject_1", "subject_1", "subject_1", "subject_1", "subject_1", | |
"subject_1", "subject_1", "subject_1" | |
), N = c( | |
10, 10, 10, 10, | |
10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10 | |
), k = c( | |
0, 0, 0, 1, | |
0, 1, 1, 3, 5, 5, 8, 9, 9, 10, 10 | |
)), row.names = c(NA, -15L), class = c( | |
"tbl_df", | |
"tbl", "data.frame" | |
)) | |
fit1 <- quickpsy( | |
db, length, k, N, | |
grouping = .(id), B = 100 | |
) | |
plotcurves(fit1, panel = id) + theme_minimal() | |
fit1$par | |
fit1$thresholds | |
# plotpar(fit1) | |
# plotthresholds(fit1, geom = 'point') |
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