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jimallman/gist:9f4a4b63f4c8d8a840d3

Created July 28, 2014 17:47
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Failing MRCA call (pg_420)
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gistfile1.txt
curl 'http://api.opentreeoflife.org/treemachine/v1/getDraftTreeMRCAForNodes' -H 'Origin: http://tree.opentreeoflife.org' -H 'Accept-Encoding: gzip,deflate,sdch' -H 'Accept-Language: en-US,en;q=0.8' -H 'User-Agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/35.0.1916.153 Safari/537.36' -H 'Content-Type: application/json; charset=UTF-8' -H 'Accept: application/json, text/javascript, */*; q=0.01' -H 'Referer: http://tree.opentreeoflife.org/curator/study/edit/pg_420/?tab=trees&tree=tree522' -H 'Connection: keep-alive' --data-binary '{"ottIds":[1085741,613883,463177,568571,28336,515158,370815,507121,699624,952596,901831,531218,73933,390841,44860,1041027,799167,683046,463185,872124,44875,622872,29742,682886,1020126,989086,276608,512910,332937,619340,438662,786441,438656,1015202,966327,549518,989084,284297,483804,244695,989088,483803,484896,815707,291638,733986,467838,991312,1097399,834690,412128,989089,1065611,897862,1039512,261312,178684,1065605,98071,427905,119211,767825,509844,1036187,317003,819164,821756,332001,5275,163950,628492,960243,887695,365489,261316,112946,214795,193407,443638,322277,752683,108973,860130,154816,689774,597797,464703,316994,363012,379419,172642,904488,1028843,656590,388853,803675,842352,539140,915651,414354,915642,440620,399793,383930,440612,1039514,787071,891428,1041421,1041429,1041422,212185,3600037,521835,70726,540029,534819,697413,697438,804122,174369,275134,726315,275129,313122,178250,178249,701547,86682,86676,938415,449653,873964,935135,392964,966321,582942,244698,880217,855119,509057,443649,329993,570959,837567,204725,1098759,153562,352754,684050,979429,765185,693334,432080,190884,436831,88395,714466,241847,241840,589156,283193,870604,402450,292460,292463,857863,292466]}' --compressed
@jimallman
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Another one (fails with TaxonNotFoundException):

curl 'http://api.opentreeoflife.org/treemachine/v1/getDraftTreeMRCAForNodes' -H 'Origin: http://tree.opentreeoflife.org' -H 'Accept-Encoding: gzip,deflate,sdch' -H 'Accept-Language: en-US,en;q=0.8' -H 'User-Agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/35.0.1916.153 Safari/537.36' -H 'Content-Type: application/json; charset=UTF-8' -H 'Accept: application/json, text/javascript, */*; q=0.01' -H 'Referer: http://tree.opentreeoflife.org/curator/study/edit/pg_2760/?tab=trees&tree=tree6375' -H 'Connection: keep-alive' --data-binary '{"ottIds":[438694,746955,845949,9042,9042,746949,93910,101878,83477,621393,1088460,274335,274335,97227,797786,837665,476860,643101,643105]}' --compressed

@jimallman
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This one works, returns Rhizocephala:

curl 'http://api.opentreeoflife.org/treemachine/v1/getDraftTreeMRCAForNodes' -H 'Origin: http://tree.opentreeoflife.org' -H 'Accept-Encoding: gzip,deflate,sdch' -H 'Accept-Language: en-US,en;q=0.8' -H 'User-Agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/35.0.1916.153 Safari/537.36' -H 'Content-Type: application/json; charset=UTF-8' -H 'Accept: application/json, text/javascript, */*; q=0.01' -H 'Referer: http://tree.opentreeoflife.org/curator/study/edit/ot_98?tab=trees&tree=tree1' -H 'Connection: keep-alive' --data-binary '{"ottIds":[458843,251974,664820,414909,777759,1071395,458842]}' --compressed

@jimallman
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This one works as expected, submitting just four taxon IDs from the ingroup:

  • 251974 (Heterosaccus californicus)
  • 791782 (Heterosaccus dollfusi)
  • 859010 (Heterosaccus lunatus)
  • 468102 (Heterosaccus papillosus)

But it returns a much deeper MRCA than expected (Rhizocephala, ottid: 363885):
http://tree.opentreeoflife.org/curator/study/edit/ot_75/?tab=trees&tree=tree1

curl 'http://api.opentreeoflife.org/treemachine/v1/getDraftTreeMRCAForNodes' -H 'Origin: http://tree.opentreeoflife.org' -H 'Accept-Encoding: gzip,deflate,sdch' -H 'Accept-Language: en-US,en;q=0.8' -H 'User-Agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/35.0.1916.153 Safari/537.36' -H 'Content-Type: application/json; charset=UTF-8' -H 'Accept: application/json, text/javascript, */*; q=0.01' -H 'Referer: http://tree.opentreeoflife.org/curator/study/edit/ot_75/?tab=trees&tree=tree1' -H 'Connection: keep-alive' --data-binary '{"ottIds":[251974,791782,859010,468102]}' --compressed

So this looks more like a problem with the MRCA reckoning than the submitting app.

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