converting vcf data to traw format using GNU parallel

get_traw_parallel.sh

#!/bin/bash

cd $PBS_O_WORKDIR || exit
source /storage/brno2/home/$USER/.bashrc

module add plink/2.0

## example: https://stackoverflow.com/a/17316302/5184574
# dowork() { 
#   echo "Starting i=$1, j=$2"
#   sleep 5
#   echo "Done i=$1, j=$2"
# }
# export -f dowork
# 
# parallel dowork ::: "${list[@]}" ::: "${other[@]}"

get_traw() {
        vcf=sim200mb/$(basename -s .txt $1 | sed 's/gens_/gens\t/' | cut -f1).vcf.gz
        out=${1%.txt}_traw

        plink2 --keep $1 --vcf $vcf --out $out --recode  A-transpose --max-alleles 2 --min-alleles 2
}
export -f get_traw

parallel -j20 get_traw ::: subsampling/*200mb*.txt