Created
January 9, 2025 19:16
-
-
Save ivirshup/749824d9b4131cd1374bebee856dc799 to your computer and use it in GitHub Desktop.
tiledbsoma failed install
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| + apt update | |
| WARNING: apt does not have a stable CLI interface. Use with caution in scripts. | |
| Get:1 http://deb.debian.org/debian bookworm InRelease [151 kB] | |
| Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] | |
| Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB] | |
| Get:4 http://deb.debian.org/debian bookworm/main amd64 Packages [8789 kB] | |
| Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages [8856 B] | |
| Get:6 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [239 kB] | |
| Fetched 9291 kB in 1s (9450 kB/s) | |
| Reading package lists... | |
| Building dependency tree... | |
| Reading state information... | |
| All packages are up to date. | |
| + apt install -y awscli | |
| WARNING: apt does not have a stable CLI interface. Use with caution in scripts. | |
| Reading package lists... | |
| Building dependency tree... | |
| Reading state information... | |
| The following additional packages will be installed: | |
| docutils-common groff-base libimagequant0 libpaper-utils libpaper1 libraqm0 | |
| libuchardet0 lsb-release mailcap mime-support python3-awscrt | |
| python3-cffi-backend python3-colorama python3-cryptography python3-dateutil | |
| python3-distro python3-docutils python3-jmespath python3-olefile python3-pil | |
| python3-pkg-resources python3-prompt-toolkit python3-pyasn1 python3-pygments | |
| python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib python3-six | |
| python3-urllib3 python3-wcwidth sgml-base xml-core | |
| Suggested packages: | |
| groff python-cryptography-doc python3-cryptography-vectors docutils-doc | |
| fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french | |
| texlive-latex-base texlive-latex-recommended python-pil-doc | |
| python3-setuptools python-pygments-doc ttf-bitstream-vera python3-brotli | |
| python3-idna python3-openssl python3-socks sgml-base-doc debhelper | |
| The following NEW packages will be installed: | |
| awscli docutils-common groff-base libimagequant0 libpaper-utils libpaper1 | |
| libraqm0 libuchardet0 lsb-release mailcap mime-support python3-awscrt | |
| python3-cffi-backend python3-colorama python3-cryptography python3-dateutil | |
| python3-distro python3-docutils python3-jmespath python3-olefile python3-pil | |
| python3-pkg-resources python3-prompt-toolkit python3-pyasn1 python3-pygments | |
| python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib python3-six | |
| python3-urllib3 python3-wcwidth sgml-base xml-core | |
| 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. | |
| Need to get 14.3 MB of archives. | |
| After this operation, 122 MB of additional disk space will be used. | |
| Get:1 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] | |
| Get:2 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] | |
| Get:3 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] | |
| Get:4 http://deb.debian.org/debian bookworm/main amd64 mailcap all 3.70+nmu1 [32.0 kB] | |
| Get:5 http://deb.debian.org/debian bookworm/main amd64 mime-support all 3.66 [10.9 kB] | |
| Get:6 http://deb.debian.org/debian bookworm/main amd64 python3-pyasn1 all 0.4.8-3 [62.2 kB] | |
| Get:7 http://deb.debian.org/debian bookworm/main amd64 python3-awscrt amd64 0.16.8+dfsg-1 [784 kB] | |
| Get:8 http://deb.debian.org/debian bookworm/main amd64 python3-colorama all 0.4.6-2 [36.8 kB] | |
| Get:9 http://deb.debian.org/debian bookworm/main amd64 python3-cffi-backend amd64 1.15.1-5+b1 [84.6 kB] | |
| Get:10 http://deb.debian.org/debian bookworm/main amd64 python3-cryptography amd64 38.0.4-3+deb12u1 [665 kB] | |
| Get:11 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] | |
| Get:12 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] | |
| Get:13 http://deb.debian.org/debian bookworm/main amd64 lsb-release all 12.0-1 [6416 B] | |
| Get:14 http://deb.debian.org/debian bookworm/main amd64 python3-distro all 1.8.0-1 [20.5 kB] | |
| Get:15 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] | |
| Get:16 http://deb.debian.org/debian bookworm/main amd64 docutils-common all 0.19+dfsg-6 [127 kB] | |
| Get:17 http://deb.debian.org/debian bookworm/main amd64 python3-roman all 3.3-3 [9880 B] | |
| Get:18 http://deb.debian.org/debian bookworm/main amd64 python3-docutils all 0.19+dfsg-6 [382 kB] | |
| Get:19 http://deb.debian.org/debian bookworm/main amd64 python3-jmespath all 1.0.1-1 [21.1 kB] | |
| Get:20 http://deb.debian.org/debian bookworm/main amd64 python3-wcwidth all 0.2.5+dfsg1-1.1 [21.4 kB] | |
| Get:21 http://deb.debian.org/debian bookworm/main amd64 python3-prompt-toolkit all 3.0.36-2 [276 kB] | |
| Get:22 http://deb.debian.org/debian bookworm/main amd64 python3-ruamel.yaml.clib amd64 0.2.7-1+b2 [113 kB] | |
| Get:23 http://deb.debian.org/debian bookworm/main amd64 python3-ruamel.yaml all 0.17.21-1 [103 kB] | |
| Get:24 http://deb.debian.org/debian bookworm/main amd64 python3-urllib3 all 1.26.12-1 [117 kB] | |
| Get:25 http://deb.debian.org/debian bookworm/main amd64 awscli all 2.9.19-1 [8624 kB] | |
| Get:26 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] | |
| Get:27 http://deb.debian.org/debian bookworm/main amd64 libpaper1 amd64 1.1.29 [12.5 kB] | |
| Get:28 http://deb.debian.org/debian bookworm/main amd64 libpaper-utils amd64 1.1.29 [8868 B] | |
| Get:29 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] | |
| Get:30 http://deb.debian.org/debian bookworm/main amd64 python3-olefile all 0.46-3 [36.1 kB] | |
| Get:31 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+deb12u1 [472 kB] | |
| Get:32 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] | |
| Get:33 http://deb.debian.org/debian bookworm/main amd64 python3-pygments all 2.14.0+dfsg-1 [783 kB] | |
| debconf: delaying package configuration, since apt-utils is not installed | |
| Fetched 14.3 MB in 0s (114 MB/s) | |
| Selecting previously unselected package sgml-base. | |
| (Reading database ... 23969 files and directories currently installed.) | |
| Preparing to unpack .../00-sgml-base_1.31_all.deb ... | |
| Unpacking sgml-base (1.31) ... | |
| Selecting previously unselected package libuchardet0:amd64. | |
| Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... | |
| Unpacking libuchardet0:amd64 (0.0.7-1) ... | |
| Selecting previously unselected package groff-base. | |
| Preparing to unpack .../02-groff-base_1.22.4-10_amd64.deb ... | |
| Unpacking groff-base (1.22.4-10) ... | |
| Selecting previously unselected package mailcap. | |
| Preparing to unpack .../03-mailcap_3.70+nmu1_all.deb ... | |
| Unpacking mailcap (3.70+nmu1) ... | |
| Selecting previously unselected package mime-support. | |
| Preparing to unpack .../04-mime-support_3.66_all.deb ... | |
| Unpacking mime-support (3.66) ... | |
| Selecting previously unselected package python3-pyasn1. | |
| Preparing to unpack .../05-python3-pyasn1_0.4.8-3_all.deb ... | |
| Unpacking python3-pyasn1 (0.4.8-3) ... | |
| Selecting previously unselected package python3-awscrt. | |
| Preparing to unpack .../06-python3-awscrt_0.16.8+dfsg-1_amd64.deb ... | |
| Unpacking python3-awscrt (0.16.8+dfsg-1) ... | |
| Selecting previously unselected package python3-colorama. | |
| Preparing to unpack .../07-python3-colorama_0.4.6-2_all.deb ... | |
| Unpacking python3-colorama (0.4.6-2) ... | |
| Selecting previously unselected package python3-cffi-backend:amd64. | |
| Preparing to unpack .../08-python3-cffi-backend_1.15.1-5+b1_amd64.deb ... | |
| Unpacking python3-cffi-backend:amd64 (1.15.1-5+b1) ... | |
| Selecting previously unselected package python3-cryptography. | |
| Preparing to unpack .../09-python3-cryptography_38.0.4-3+deb12u1_amd64.deb ... | |
| Unpacking python3-cryptography (38.0.4-3+deb12u1) ... | |
| Selecting previously unselected package python3-six. | |
| Preparing to unpack .../10-python3-six_1.16.0-4_all.deb ... | |
| Unpacking python3-six (1.16.0-4) ... | |
| Selecting previously unselected package python3-dateutil. | |
| Preparing to unpack .../11-python3-dateutil_2.8.2-2_all.deb ... | |
| Unpacking python3-dateutil (2.8.2-2) ... | |
| Selecting previously unselected package lsb-release. | |
| Preparing to unpack .../12-lsb-release_12.0-1_all.deb ... | |
| Unpacking lsb-release (12.0-1) ... | |
| Selecting previously unselected package python3-distro. | |
| Preparing to unpack .../13-python3-distro_1.8.0-1_all.deb ... | |
| Unpacking python3-distro (1.8.0-1) ... | |
| Selecting previously unselected package xml-core. | |
| Preparing to unpack .../14-xml-core_0.18+nmu1_all.deb ... | |
| Unpacking xml-core (0.18+nmu1) ... | |
| Selecting previously unselected package docutils-common. | |
| Preparing to unpack .../15-docutils-common_0.19+dfsg-6_all.deb ... | |
| Unpacking docutils-common (0.19+dfsg-6) ... | |
| Selecting previously unselected package python3-roman. | |
| Preparing to unpack .../16-python3-roman_3.3-3_all.deb ... | |
| Unpacking python3-roman (3.3-3) ... | |
| Selecting previously unselected package python3-docutils. | |
| Preparing to unpack .../17-python3-docutils_0.19+dfsg-6_all.deb ... | |
| Unpacking python3-docutils (0.19+dfsg-6) ... | |
| Selecting previously unselected package python3-jmespath. | |
| Preparing to unpack .../18-python3-jmespath_1.0.1-1_all.deb ... | |
| Unpacking python3-jmespath (1.0.1-1) ... | |
| Selecting previously unselected package python3-wcwidth. | |
| Preparing to unpack .../19-python3-wcwidth_0.2.5+dfsg1-1.1_all.deb ... | |
| Unpacking python3-wcwidth (0.2.5+dfsg1-1.1) ... | |
| Selecting previously unselected package python3-prompt-toolkit. | |
| Preparing to unpack .../20-python3-prompt-toolkit_3.0.36-2_all.deb ... | |
| Unpacking python3-prompt-toolkit (3.0.36-2) ... | |
| Selecting previously unselected package python3-ruamel.yaml.clib:amd64. | |
| Preparing to unpack .../21-python3-ruamel.yaml.clib_0.2.7-1+b2_amd64.deb ... | |
| Unpacking python3-ruamel.yaml.clib:amd64 (0.2.7-1+b2) ... | |
| Selecting previously unselected package python3-ruamel.yaml. | |
| Preparing to unpack .../22-python3-ruamel.yaml_0.17.21-1_all.deb ... | |
| Unpacking python3-ruamel.yaml (0.17.21-1) ... | |
| Selecting previously unselected package python3-urllib3. | |
| Preparing to unpack .../23-python3-urllib3_1.26.12-1_all.deb ... | |
| Unpacking python3-urllib3 (1.26.12-1) ... | |
| Selecting previously unselected package awscli. | |
| Preparing to unpack .../24-awscli_2.9.19-1_all.deb ... | |
| Unpacking awscli (2.9.19-1) ... | |
| Selecting previously unselected package libimagequant0:amd64. | |
| Preparing to unpack .../25-libimagequant0_2.17.0-1_amd64.deb ... | |
| Unpacking libimagequant0:amd64 (2.17.0-1) ... | |
| Selecting previously unselected package libpaper1:amd64. | |
| Preparing to unpack .../26-libpaper1_1.1.29_amd64.deb ... | |
| Unpacking libpaper1:amd64 (1.1.29) ... | |
| Selecting previously unselected package libpaper-utils. | |
| Preparing to unpack .../27-libpaper-utils_1.1.29_amd64.deb ... | |
| Unpacking libpaper-utils (1.1.29) ... | |
| Selecting previously unselected package libraqm0:amd64. | |
| Preparing to unpack .../28-libraqm0_0.7.0-4.1_amd64.deb ... | |
| Unpacking libraqm0:amd64 (0.7.0-4.1) ... | |
| Selecting previously unselected package python3-olefile. | |
| Preparing to unpack .../29-python3-olefile_0.46-3_all.deb ... | |
| Unpacking python3-olefile (0.46-3) ... | |
| Selecting previously unselected package python3-pil:amd64. | |
| Preparing to unpack .../30-python3-pil_9.4.0-1.1+deb12u1_amd64.deb ... | |
| Unpacking python3-pil:amd64 (9.4.0-1.1+deb12u1) ... | |
| Selecting previously unselected package python3-pkg-resources. | |
| Preparing to unpack .../31-python3-pkg-resources_66.1.1-1_all.deb ... | |
| Unpacking python3-pkg-resources (66.1.1-1) ... | |
| Selecting previously unselected package python3-pygments. | |
| Preparing to unpack .../32-python3-pygments_2.14.0+dfsg-1_all.deb ... | |
| Unpacking python3-pygments (2.14.0+dfsg-1) ... | |
| Setting up python3-pkg-resources (66.1.1-1) ... | |
| Setting up python3-awscrt (0.16.8+dfsg-1) ... | |
| Setting up libpaper1:amd64 (1.1.29) ... | |
| debconf: unable to initialize frontend: Dialog | |
| debconf: (TERM is not set, so the dialog frontend is not usable.) | |
| debconf: falling back to frontend: Readline | |
| debconf: unable to initialize frontend: Readline | |
| debconf: (This frontend requires a controlling tty.) | |
| debconf: falling back to frontend: Teletype | |
| Creating config file /etc/papersize with new version | |
| Setting up python3-colorama (0.4.6-2) ... | |
| Setting up python3-olefile (0.46-3) ... | |
| Setting up python3-ruamel.yaml.clib:amd64 (0.2.7-1+b2) ... | |
| Setting up libpaper-utils (1.1.29) ... | |
| Setting up python3-six (1.16.0-4) ... | |
| Setting up python3-roman (3.3-3) ... | |
| Setting up python3-pygments (2.14.0+dfsg-1) ... | |
| Setting up python3-wcwidth (0.2.5+dfsg1-1.1) ... | |
| Setting up python3-jmespath (1.0.1-1) ... | |
| Setting up libraqm0:amd64 (0.7.0-4.1) ... | |
| Setting up libimagequant0:amd64 (2.17.0-1) ... | |
| Setting up python3-urllib3 (1.26.12-1) ... | |
| Setting up python3-ruamel.yaml (0.17.21-1) ... | |
| Setting up libuchardet0:amd64 (0.0.7-1) ... | |
| Setting up python3-pyasn1 (0.4.8-3) ... | |
| Setting up python3-dateutil (2.8.2-2) ... | |
| Setting up sgml-base (1.31) ... | |
| Setting up lsb-release (12.0-1) ... | |
| Setting up mailcap (3.70+nmu1) ... | |
| Setting up python3-cffi-backend:amd64 (1.15.1-5+b1) ... | |
| Setting up python3-prompt-toolkit (3.0.36-2) ... | |
| Setting up mime-support (3.66) ... | |
| Setting up python3-distro (1.8.0-1) ... | |
| Setting up python3-pil:amd64 (9.4.0-1.1+deb12u1) ... | |
| Setting up python3-cryptography (38.0.4-3+deb12u1) ... | |
| Setting up groff-base (1.22.4-10) ... | |
| Setting up xml-core (0.18+nmu1) ... | |
| Processing triggers for libc-bin (2.36-9+deb12u9) ... | |
| Processing triggers for sgml-base (1.31) ... | |
| Setting up docutils-common (0.19+dfsg-6) ... | |
| Processing triggers for sgml-base (1.31) ... | |
| Setting up python3-docutils (0.19+dfsg-6) ... | |
| Setting up awscli (2.9.19-1) ... | |
| + pip install --upgrade pip | |
| Requirement already satisfied: pip in /usr/local/lib/python3.11/site-packages (24.0) | |
| Collecting pip | |
| Downloading pip-24.3.1-py3-none-any.whl.metadata (3.7 kB) | |
| Downloading pip-24.3.1-py3-none-any.whl (1.8 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 13.1 MB/s eta 0:00:00 | |
| Installing collected packages: pip | |
| Attempting uninstall: pip | |
| Found existing installation: pip 24.0 | |
| Uninstalling pip-24.0: | |
| Successfully uninstalled pip-24.0 | |
| Successfully installed pip-24.3.1 | |
| WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv | |
| + aws s3 ls s3://ivirshup-tmp/spatial-census-builds/ | |
| PRE logs/ | |
| PRE slideseq-2024-08-16/ | |
| PRE slideseq-2024-10-29/ | |
| PRE slideseq-2024-12-05T22:44:59Z/ | |
| PRE slideseq/ | |
| PRE visium-2024-08-16/ | |
| PRE visium-2024-10-29/ | |
| PRE visium-2024-11-22/ | |
| PRE visium/ | |
| + CENSUS_BUILDER_WORKING_DIR=/mnt/vol/spatial-census-builds/ | |
| + mkdir -p /mnt/vol/spatial-census-builds/ | |
| + git clone https://github.com/chanzuckerberg/cellxgene-census.git | |
| Cloning into 'cellxgene-census'... | |
| + cd cellxgene-census | |
| + git checkout ivirshup/census-builder-spatial | |
| Switched to a new branch 'ivirshup/census-builder-spatial' | |
| branch 'ivirshup/census-builder-spatial' set up to track 'origin/ivirshup/census-builder-spatial'. | |
| + pip install -e tools/cellxgene_census_builder/ | |
| Obtaining file:///cellxgene-census/tools/cellxgene_census_builder | |
| Installing build dependencies: started | |
| Installing build dependencies: finished with status 'done' | |
| Checking if build backend supports build_editable: started | |
| Checking if build backend supports build_editable: finished with status 'done' | |
| Getting requirements to build editable: started | |
| Getting requirements to build editable: finished with status 'done' | |
| Installing backend dependencies: started | |
| Installing backend dependencies: finished with status 'done' | |
| Preparing editable metadata (pyproject.toml): started | |
| Preparing editable metadata (pyproject.toml): finished with status 'done' | |
| Processing ./api/python/cellxgene_census (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Installing build dependencies: started | |
| Installing build dependencies: finished with status 'done' | |
| Getting requirements to build wheel: started | |
| Getting requirements to build wheel: finished with status 'done' | |
| Preparing metadata (pyproject.toml): started | |
| Preparing metadata (pyproject.toml): finished with status 'done' | |
| Collecting tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/ (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Cloning https://github.com/single-cell-data/TileDB-SOMA.git (to revision 16467fa7405d59ab1763f103081318b839f87610) to /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e | |
| Running command git clone --filter=blob:none --quiet https://github.com/single-cell-data/TileDB-SOMA.git /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e | |
| Running command git rev-parse -q --verify 'sha^16467fa7405d59ab1763f103081318b839f87610' | |
| Running command git fetch -q https://github.com/single-cell-data/TileDB-SOMA.git 16467fa7405d59ab1763f103081318b839f87610 | |
| Running command git checkout -q 16467fa7405d59ab1763f103081318b839f87610 | |
| Resolved https://github.com/single-cell-data/TileDB-SOMA.git to commit 16467fa7405d59ab1763f103081318b839f87610 | |
| Installing build dependencies: started | |
| Installing build dependencies: finished with status 'done' | |
| Getting requirements to build wheel: started | |
| Getting requirements to build wheel: finished with status 'done' | |
| Preparing metadata (pyproject.toml): started | |
| Preparing metadata (pyproject.toml): finished with status 'done' | |
| Collecting aiohttp (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading aiohttp-3.11.11-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.7 kB) | |
| Collecting anndata (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading anndata-0.11.2-py3-none-any.whl.metadata (8.2 kB) | |
| Collecting attrs>=23.2.0 (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading attrs-24.3.0-py3-none-any.whl.metadata (11 kB) | |
| Collecting cellxgene-ontology-guide>=1.2 (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading cellxgene_ontology_guide-1.3.1-py3-none-any.whl.metadata (2.7 kB) | |
| Collecting dask (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading dask-2024.12.1-py3-none-any.whl.metadata (3.7 kB) | |
| Collecting distributed (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading distributed-2024.12.1-py3-none-any.whl.metadata (3.3 kB) | |
| Collecting filelock (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading filelock-3.16.1-py3-none-any.whl.metadata (2.9 kB) | |
| Collecting fsspec[http] (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading fsspec-2024.12.0-py3-none-any.whl.metadata (11 kB) | |
| Collecting gitpython>=3.1.42 (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading GitPython-3.1.44-py3-none-any.whl.metadata (13 kB) | |
| Collecting numba>=0.59.1 (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading numba-0.60.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.7 kB) | |
| Collecting numpy>=1.26.4 (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading numpy-2.2.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (62 kB) | |
| Collecting pandas>=2.2.1 (from pandas[performance]>=2.2.1->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading pandas-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB) | |
| Collecting psutil>=5.9.8 (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading psutil-6.1.1-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (22 kB) | |
| Collecting pyarrow>=15.0.2 (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading pyarrow-18.1.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.3 kB) | |
| Collecting pyyaml>=6.0.1 (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) | |
| Collecting requests>=2.32.0 (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) | |
| Collecting s3fs (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading s3fs-2024.12.0-py3-none-any.whl.metadata (1.6 kB) | |
| Collecting scipy>=1.12.0 (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading scipy-1.15.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) | |
| Collecting spatialdata (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading spatialdata-0.2.6-py3-none-any.whl.metadata (9.6 kB) | |
| Collecting tiledb (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading tiledb-0.33.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.7 kB) | |
| Collecting typing-extensions>=4.10.0 (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) | |
| Collecting semantic_version<3,>=2.10.0 (from cellxgene-ontology-guide>=1.2->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading semantic_version-2.10.0-py2.py3-none-any.whl.metadata (9.7 kB) | |
| Collecting gitdb<5,>=4.0.1 (from gitpython>=3.1.42->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading gitdb-4.0.12-py3-none-any.whl.metadata (1.2 kB) | |
| Collecting llvmlite<0.44,>=0.43.0dev0 (from numba>=0.59.1->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading llvmlite-0.43.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.8 kB) | |
| Collecting numpy>=1.26.4 (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading numpy-2.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) | |
| Collecting python-dateutil>=2.8.2 (from pandas>=2.2.1->pandas[performance]>=2.2.1->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) | |
| Collecting pytz>=2020.1 (from pandas>=2.2.1->pandas[performance]>=2.2.1->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB) | |
| Collecting tzdata>=2022.7 (from pandas>=2.2.1->pandas[performance]>=2.2.1->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading tzdata-2024.2-py2.py3-none-any.whl.metadata (1.4 kB) | |
| Collecting bottleneck>=1.3.6 (from pandas[performance]>=2.2.1->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading Bottleneck-1.4.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.7 kB) | |
| Collecting numexpr>=2.8.4 (from pandas[performance]>=2.2.1->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading numexpr-2.10.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB) | |
| Collecting charset-normalizer<4,>=2 (from requests>=2.32.0->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB) | |
| Collecting idna<4,>=2.5 (from requests>=2.32.0->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading idna-3.10-py3-none-any.whl.metadata (10 kB) | |
| Collecting urllib3<3,>=1.21.1 (from requests>=2.32.0->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading urllib3-2.3.0-py3-none-any.whl.metadata (6.5 kB) | |
| Collecting certifi>=2017.4.17 (from requests>=2.32.0->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading certifi-2024.12.14-py3-none-any.whl.metadata (2.3 kB) | |
| Collecting aiohappyeyeballs>=2.3.0 (from aiohttp->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading aiohappyeyeballs-2.4.4-py3-none-any.whl.metadata (6.1 kB) | |
| Collecting aiosignal>=1.1.2 (from aiohttp->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading aiosignal-1.3.2-py2.py3-none-any.whl.metadata (3.8 kB) | |
| Collecting frozenlist>=1.1.1 (from aiohttp->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading frozenlist-1.5.0-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (13 kB) | |
| Collecting multidict<7.0,>=4.5 (from aiohttp->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading multidict-6.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.0 kB) | |
| Collecting propcache>=0.2.0 (from aiohttp->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading propcache-0.2.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) | |
| Collecting yarl<2.0,>=1.17.0 (from aiohttp->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading yarl-1.18.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (69 kB) | |
| Collecting array-api-compat!=1.5,>1.4 (from anndata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading array_api_compat-1.10.0-py3-none-any.whl.metadata (1.6 kB) | |
| Collecting h5py>=3.7 (from anndata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading h5py-3.12.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB) | |
| Collecting natsort (from anndata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading natsort-8.4.0-py3-none-any.whl.metadata (21 kB) | |
| Collecting packaging>=20.0 (from anndata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Using cached packaging-24.2-py3-none-any.whl.metadata (3.2 kB) | |
| Collecting numpy>=1.26.4 (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) | |
| Collecting aiobotocore<3.0.0,>=2.5.4 (from s3fs->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading aiobotocore-2.17.0-py3-none-any.whl.metadata (23 kB) | |
| Collecting scanpy>=1.9.2 (from tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading scanpy-1.10.4-py3-none-any.whl.metadata (9.3 kB) | |
| Collecting somacore==1.0.26 (from tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading somacore-1.0.26-py3-none-any.whl.metadata (1.5 kB) | |
| Collecting pyarrow-hotfix (from somacore==1.0.26->tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading pyarrow_hotfix-0.6-py3-none-any.whl.metadata (3.6 kB) | |
| Collecting shapely (from somacore==1.0.26->tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading shapely-2.0.6-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.0 kB) | |
| Collecting click>=8.1 (from dask->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading click-8.1.8-py3-none-any.whl.metadata (2.3 kB) | |
| Collecting cloudpickle>=3.0.0 (from dask->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading cloudpickle-3.1.0-py3-none-any.whl.metadata (7.0 kB) | |
| Collecting partd>=1.4.0 (from dask->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) | |
| Collecting toolz>=0.10.0 (from dask->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading toolz-1.0.0-py3-none-any.whl.metadata (5.1 kB) | |
| Collecting importlib_metadata>=4.13.0 (from dask->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB) | |
| Collecting jinja2>=2.10.3 (from distributed->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading jinja2-3.1.5-py3-none-any.whl.metadata (2.6 kB) | |
| Collecting locket>=1.0.0 (from distributed->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB) | |
| Collecting msgpack>=1.0.2 (from distributed->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB) | |
| Collecting sortedcontainers>=2.0.5 (from distributed->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading sortedcontainers-2.4.0-py2.py3-none-any.whl.metadata (10 kB) | |
| Collecting tblib>=1.6.0 (from distributed->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading tblib-3.0.0-py3-none-any.whl.metadata (25 kB) | |
| Collecting tornado>=6.2.0 (from distributed->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading tornado-6.4.2-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB) | |
| Collecting zict>=3.0.0 (from distributed->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading zict-3.0.0-py2.py3-none-any.whl.metadata (899 bytes) | |
| Collecting dask-image (from spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading dask_image-2024.5.3-py3-none-any.whl.metadata (2.8 kB) | |
| INFO: pip is looking at multiple versions of spatialdata to determine which version is compatible with other requirements. This could take a while. | |
| Collecting spatialdata (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading spatialdata-0.2.5.post0-py3-none-any.whl.metadata (9.6 kB) | |
| Downloading spatialdata-0.2.5-py3-none-any.whl.metadata (9.6 kB) | |
| Downloading spatialdata-0.2.4-py3-none-any.whl.metadata (9.6 kB) | |
| Downloading spatialdata-0.2.3-py3-none-any.whl.metadata (9.4 kB) | |
| Downloading spatialdata-0.2.2-py3-none-any.whl.metadata (9.4 kB) | |
| Downloading spatialdata-0.2.1-py3-none-any.whl.metadata (9.4 kB) | |
| Downloading spatialdata-0.2.0-py3-none-any.whl.metadata (9.4 kB) | |
| INFO: pip is still looking at multiple versions of spatialdata to determine which version is compatible with other requirements. This could take a while. | |
| Downloading spatialdata-0.1.2-py3-none-any.whl.metadata (9.3 kB) | |
| Downloading spatialdata-0.1.1-py3-none-any.whl.metadata (9.2 kB) | |
| Downloading spatialdata-0.1.0-py3-none-any.whl.metadata (9.0 kB) | |
| Downloading spatialdata-0.0.16-py3-none-any.whl.metadata (8.7 kB) | |
| Downloading spatialdata-0.0.15-py3-none-any.whl.metadata (8.6 kB) | |
| INFO: This is taking longer than usual. You might need to provide the dependency resolver with stricter constraints to reduce runtime. See https://pip.pypa.io/warnings/backtracking for guidance. If you want to abort this run, press Ctrl + C. | |
| Downloading spatialdata-0.0.14-py3-none-any.whl.metadata (8.6 kB) | |
| Downloading spatialdata-0.0.13-py3-none-any.whl.metadata (8.4 kB) | |
| Collecting geopandas (from spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading geopandas-1.0.1-py3-none-any.whl.metadata (2.2 kB) | |
| Collecting multiscale-spatial-image>=0.11.2 (from spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading multiscale_spatial_image-2.0.2-py3-none-any.whl.metadata (25 kB) | |
| Collecting networkx (from spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading networkx-3.4.2-py3-none-any.whl.metadata (6.3 kB) | |
| Collecting ome-zarr>=0.7.0 (from spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading ome_zarr-0.10.3-py3-none-any.whl.metadata (3.1 kB) | |
| Collecting pygeos (from spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading pygeos-0.14-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.9 kB) | |
| Collecting rich (from spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading rich-13.9.4-py3-none-any.whl.metadata (18 kB) | |
| Collecting spatial-image>=0.3.0 (from spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading spatial_image-1.1.0-py3-none-any.whl.metadata (5.5 kB) | |
| Collecting tqdm (from spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading tqdm-4.67.1-py3-none-any.whl.metadata (57 kB) | |
| Collecting spatialdata (from cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading spatialdata-0.0.12-py3-none-any.whl.metadata (7.3 kB) | |
| Downloading spatialdata-0.0.11-py3-none-any.whl.metadata (7.3 kB) | |
| Downloading spatialdata-0.0.10-py3-none-any.whl.metadata (7.3 kB) | |
| Downloading spatialdata-0.0.9-py3-none-any.whl.metadata (7.3 kB) | |
| Downloading spatialdata-0.0.8-py3-none-any.whl.metadata (7.3 kB) | |
| Collecting xarray (from spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading xarray-2025.1.1-py3-none-any.whl.metadata (11 kB) | |
| Collecting xarray-schema (from spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading xarray_schema-0.0.3-py3-none-any.whl.metadata (4.3 kB) | |
| Collecting xarray-spatial>=0.3.5 (from spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading xarray_spatial-0.4.0-py3-none-any.whl.metadata (16 kB) | |
| Collecting zarr (from spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading zarr-3.0.0-py3-none-any.whl.metadata (9.5 kB) | |
| Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading aioitertools-0.12.0-py3-none-any.whl.metadata (3.8 kB) | |
| Collecting botocore<1.35.94,>=1.35.74 (from aiobotocore<3.0.0,>=2.5.4->s3fs->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading botocore-1.35.93-py3-none-any.whl.metadata (5.7 kB) | |
| Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading jmespath-1.0.1-py3-none-any.whl.metadata (7.6 kB) | |
| Collecting wrapt<2.0.0,>=1.10.10 (from aiobotocore<3.0.0,>=2.5.4->s3fs->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading wrapt-1.17.0-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB) | |
| Collecting smmap<6,>=3.0.1 (from gitdb<5,>=4.0.1->gitpython>=3.1.42->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading smmap-5.0.2-py3-none-any.whl.metadata (4.3 kB) | |
| Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading zipp-3.21.0-py3-none-any.whl.metadata (3.7 kB) | |
| Collecting MarkupSafe>=2.0 (from jinja2>=2.10.3->distributed->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB) | |
| Collecting zarr (from spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading zarr-2.18.4-py3-none-any.whl.metadata (5.8 kB) | |
| Collecting scikit-image (from ome-zarr>=0.7.0->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading scikit_image-0.25.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (14 kB) | |
| Collecting six>=1.5 (from python-dateutil>=2.8.2->pandas>=2.2.1->pandas[performance]>=2.2.1->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) | |
| Collecting joblib (from scanpy>=1.9.2->tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading joblib-1.4.2-py3-none-any.whl.metadata (5.4 kB) | |
| Collecting legacy-api-wrap>=1.4 (from scanpy>=1.9.2->tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading legacy_api_wrap-1.4.1-py3-none-any.whl.metadata (2.1 kB) | |
| Collecting matplotlib>=3.6 (from scanpy>=1.9.2->tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading matplotlib-3.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (11 kB) | |
| Collecting patsy!=1.0.0 (from scanpy>=1.9.2->tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading patsy-1.0.1-py2.py3-none-any.whl.metadata (3.3 kB) | |
| Collecting pynndescent>=0.5 (from scanpy>=1.9.2->tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading pynndescent-0.5.13-py3-none-any.whl.metadata (6.8 kB) | |
| Collecting scikit-learn>=1.1 (from scanpy>=1.9.2->tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading scikit_learn-1.6.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (18 kB) | |
| Collecting seaborn>=0.13 (from scanpy>=1.9.2->tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading seaborn-0.13.2-py3-none-any.whl.metadata (5.4 kB) | |
| Collecting session-info (from scanpy>=1.9.2->tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading session_info-1.0.0.tar.gz (24 kB) | |
| Preparing metadata (setup.py): started | |
| Preparing metadata (setup.py): finished with status 'done' | |
| Collecting statsmodels>=0.13 (from scanpy>=1.9.2->tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading statsmodels-0.14.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) | |
| Collecting umap-learn!=0.5.0,>=0.5 (from scanpy>=1.9.2->tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading umap_learn-0.5.7-py3-none-any.whl.metadata (21 kB) | |
| Collecting xarray-dataclasses>=1.1.0 (from spatial-image>=0.3.0->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading xarray_dataclasses-1.9.1-py3-none-any.whl.metadata (10 kB) | |
| Collecting datashader>=0.15.0 (from xarray-spatial>=0.3.5->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading datashader-0.16.3-py2.py3-none-any.whl.metadata (12 kB) | |
| Collecting asciitree (from zarr->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading asciitree-0.3.3.tar.gz (4.0 kB) | |
| Preparing metadata (setup.py): started | |
| Preparing metadata (setup.py): finished with status 'done' | |
| Collecting fasteners (from zarr->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading fasteners-0.19-py3-none-any.whl.metadata (4.9 kB) | |
| Collecting numcodecs!=0.14.0,!=0.14.1,>=0.10.0 (from zarr->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading numcodecs-0.13.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.9 kB) | |
| Collecting pims>=0.4.1 (from dask-image->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading pims-0.7.tar.gz (87 kB) | |
| Preparing metadata (setup.py): started | |
| Preparing metadata (setup.py): finished with status 'done' | |
| Collecting tifffile>=2018.10.18 (from dask-image->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading tifffile-2024.12.12-py3-none-any.whl.metadata (31 kB) | |
| Collecting pyogrio>=0.7.2 (from geopandas->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading pyogrio-0.10.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (5.5 kB) | |
| Collecting pyproj>=3.3.0 (from geopandas->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading pyproj-3.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (31 kB) | |
| Collecting markdown-it-py>=2.2.0 (from rich->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading markdown_it_py-3.0.0-py3-none-any.whl.metadata (6.9 kB) | |
| Collecting pygments<3.0.0,>=2.13.0 (from rich->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading pygments-2.19.1-py3-none-any.whl.metadata (2.5 kB) | |
| Collecting dask-expr<1.2,>=1.1 (from dask[array,dataframe]>=2024.4.1->dask-image->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading dask_expr-1.1.21-py3-none-any.whl.metadata (2.6 kB) | |
| Collecting colorcet (from datashader>=0.15.0->xarray-spatial>=0.3.5->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading colorcet-3.1.0-py3-none-any.whl.metadata (6.3 kB) | |
| Collecting multipledispatch (from datashader>=0.15.0->xarray-spatial>=0.3.5->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading multipledispatch-1.0.0-py3-none-any.whl.metadata (3.8 kB) | |
| Collecting param (from datashader>=0.15.0->xarray-spatial>=0.3.5->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading param-2.2.0-py3-none-any.whl.metadata (6.6 kB) | |
| Collecting pillow (from datashader>=0.15.0->xarray-spatial>=0.3.5->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (9.1 kB) | |
| Collecting pyct (from datashader>=0.15.0->xarray-spatial>=0.3.5->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading pyct-0.5.0-py2.py3-none-any.whl.metadata (7.4 kB) | |
| Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) | |
| Collecting contourpy>=1.0.1 (from matplotlib>=3.6->scanpy>=1.9.2->tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading contourpy-1.3.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.4 kB) | |
| Collecting cycler>=0.10 (from matplotlib>=3.6->scanpy>=1.9.2->tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) | |
| Collecting fonttools>=4.22.0 (from matplotlib>=3.6->scanpy>=1.9.2->tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading fonttools-4.55.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (165 kB) | |
| Collecting kiwisolver>=1.3.1 (from matplotlib>=3.6->scanpy>=1.9.2->tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading kiwisolver-1.4.8-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.2 kB) | |
| Collecting pyparsing>=2.3.1 (from matplotlib>=3.6->scanpy>=1.9.2->tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading pyparsing-3.2.1-py3-none-any.whl.metadata (5.0 kB) | |
| Collecting imageio (from pims>=0.4.1->dask-image->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading imageio-2.36.1-py3-none-any.whl.metadata (5.2 kB) | |
| Collecting slicerator>=0.9.8 (from pims>=0.4.1->dask-image->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading slicerator-1.1.0-py3-none-any.whl.metadata (1.9 kB) | |
| Collecting threadpoolctl>=3.1.0 (from scikit-learn>=1.1->scanpy>=1.9.2->tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading threadpoolctl-3.5.0-py3-none-any.whl.metadata (13 kB) | |
| Collecting xarray (from spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading xarray-2024.11.0-py3-none-any.whl.metadata (11 kB) | |
| Collecting lazy-loader>=0.4 (from scikit-image->ome-zarr>=0.7.0->spatialdata->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB) | |
| Collecting stdlib_list (from session-info->scanpy>=1.9.2->tiledbsoma@ git+https://github.com/single-cell-data/TileDB-SOMA.git@16467fa7405d59ab1763f103081318b839f87610#egg=tiledbsoma&subdirectory=apis/python/->cellxgene-census-builder==1.16.3.dev82+g3a6229d) | |
| Downloading stdlib_list-0.11.0-py3-none-any.whl.metadata (3.3 kB) | |
| Downloading attrs-24.3.0-py3-none-any.whl (63 kB) | |
| Downloading cellxgene_ontology_guide-1.3.1-py3-none-any.whl (31.9 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 31.9/31.9 MB 133.8 MB/s eta 0:00:00 | |
| Downloading GitPython-3.1.44-py3-none-any.whl (207 kB) | |
| Downloading numba-0.60.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (3.7 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.7/3.7 MB 137.9 MB/s eta 0:00:00 | |
| Downloading pandas-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 13.1/13.1 MB 141.2 MB/s eta 0:00:00 | |
| Downloading psutil-6.1.1-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (287 kB) | |
| Downloading pyarrow-18.1.0-cp311-cp311-manylinux_2_28_x86_64.whl (40.1 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.1/40.1 MB 191.0 MB/s eta 0:00:00 | |
| Downloading PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 763.0/763.0 kB 93.3 MB/s eta 0:00:00 | |
| Downloading requests-2.32.3-py3-none-any.whl (64 kB) | |
| Downloading scipy-1.15.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (40.6 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.6/40.6 MB 201.5 MB/s eta 0:00:00 | |
| Downloading typing_extensions-4.12.2-py3-none-any.whl (37 kB) | |
| Downloading aiohttp-3.11.11-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.7 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 164.4 MB/s eta 0:00:00 | |
| Downloading anndata-0.11.2-py3-none-any.whl (142 kB) | |
| Downloading numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.3 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 18.3/18.3 MB 208.5 MB/s eta 0:00:00 | |
| Downloading s3fs-2024.12.0-py3-none-any.whl (30 kB) | |
| Downloading fsspec-2024.12.0-py3-none-any.whl (183 kB) | |
| Downloading somacore-1.0.26-py3-none-any.whl (38 kB) | |
| Downloading dask-2024.12.1-py3-none-any.whl (1.3 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.3/1.3 MB 124.0 MB/s eta 0:00:00 | |
| Downloading distributed-2024.12.1-py3-none-any.whl (1.0 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.0/1.0 MB 108.4 MB/s eta 0:00:00 | |
| Downloading filelock-3.16.1-py3-none-any.whl (16 kB) | |
| Downloading spatialdata-0.0.8-py3-none-any.whl (97 kB) | |
| Downloading tiledb-0.33.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.9 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.9/16.9 MB 146.9 MB/s eta 0:00:00 | |
| Downloading aiobotocore-2.17.0-py3-none-any.whl (77 kB) | |
| Downloading aiohappyeyeballs-2.4.4-py3-none-any.whl (14 kB) | |
| Downloading aiosignal-1.3.2-py2.py3-none-any.whl (7.6 kB) | |
| Downloading array_api_compat-1.10.0-py3-none-any.whl (50 kB) | |
| Downloading Bottleneck-1.4.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (360 kB) | |
| Downloading certifi-2024.12.14-py3-none-any.whl (164 kB) | |
| Downloading charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB) | |
| Downloading click-8.1.8-py3-none-any.whl (98 kB) | |
| Downloading cloudpickle-3.1.0-py3-none-any.whl (22 kB) | |
| Downloading frozenlist-1.5.0-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (274 kB) | |
| Downloading gitdb-4.0.12-py3-none-any.whl (62 kB) | |
| Downloading h5py-3.12.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.5 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.5/5.5 MB 135.8 MB/s eta 0:00:00 | |
| Downloading idna-3.10-py3-none-any.whl (70 kB) | |
| Downloading importlib_metadata-8.5.0-py3-none-any.whl (26 kB) | |
| Downloading jinja2-3.1.5-py3-none-any.whl (134 kB) | |
| Downloading llvmlite-0.43.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (43.9 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 43.9/43.9 MB 133.2 MB/s eta 0:00:00 | |
| Downloading locket-1.0.0-py2.py3-none-any.whl (4.4 kB) | |
| Downloading msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (403 kB) | |
| Downloading multidict-6.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (129 kB) | |
| Downloading multiscale_spatial_image-2.0.2-py3-none-any.whl (29 kB) | |
| Downloading numexpr-2.10.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (398 kB) | |
| Downloading ome_zarr-0.10.3-py3-none-any.whl (37 kB) | |
| Using cached packaging-24.2-py3-none-any.whl (65 kB) | |
| Downloading partd-1.4.2-py3-none-any.whl (18 kB) | |
| Downloading propcache-0.2.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (231 kB) | |
| Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) | |
| Downloading pytz-2024.2-py2.py3-none-any.whl (508 kB) | |
| Downloading scanpy-1.10.4-py3-none-any.whl (2.1 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 166.4 MB/s eta 0:00:00 | |
| Downloading networkx-3.4.2-py3-none-any.whl (1.7 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 169.3 MB/s eta 0:00:00 | |
| Downloading semantic_version-2.10.0-py2.py3-none-any.whl (15 kB) | |
| Downloading shapely-2.0.6-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.5 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.5/2.5 MB 167.5 MB/s eta 0:00:00 | |
| Downloading sortedcontainers-2.4.0-py2.py3-none-any.whl (29 kB) | |
| Downloading spatial_image-1.1.0-py3-none-any.whl (8.0 kB) | |
| Downloading tblib-3.0.0-py3-none-any.whl (12 kB) | |
| Downloading toolz-1.0.0-py3-none-any.whl (56 kB) | |
| Downloading tornado-6.4.2-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (437 kB) | |
| Downloading tzdata-2024.2-py2.py3-none-any.whl (346 kB) | |
| Downloading urllib3-2.3.0-py3-none-any.whl (128 kB) | |
| Downloading xarray_spatial-0.4.0-py3-none-any.whl (2.0 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 187.7 MB/s eta 0:00:00 | |
| Downloading yarl-1.18.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (344 kB) | |
| Downloading zarr-2.18.4-py3-none-any.whl (210 kB) | |
| Downloading zict-3.0.0-py2.py3-none-any.whl (43 kB) | |
| Downloading dask_image-2024.5.3-py3-none-any.whl (59 kB) | |
| Downloading geopandas-1.0.1-py3-none-any.whl (323 kB) | |
| Downloading natsort-8.4.0-py3-none-any.whl (38 kB) | |
| Downloading pygeos-0.14-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.2 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.2/2.2 MB 117.4 MB/s eta 0:00:00 | |
| Downloading rich-13.9.4-py3-none-any.whl (242 kB) | |
| Downloading tqdm-4.67.1-py3-none-any.whl (78 kB) | |
| Downloading xarray_schema-0.0.3-py3-none-any.whl (10 kB) | |
| Downloading aioitertools-0.12.0-py3-none-any.whl (24 kB) | |
| Downloading botocore-1.35.93-py3-none-any.whl (13.3 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 13.3/13.3 MB 213.9 MB/s eta 0:00:00 | |
| Downloading datashader-0.16.3-py2.py3-none-any.whl (18.3 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 18.3/18.3 MB 208.4 MB/s eta 0:00:00 | |
| Downloading jmespath-1.0.1-py3-none-any.whl (20 kB) | |
| Downloading legacy_api_wrap-1.4.1-py3-none-any.whl (10.0 kB) | |
| Downloading markdown_it_py-3.0.0-py3-none-any.whl (87 kB) | |
| Downloading MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB) | |
| Downloading matplotlib-3.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.6 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.6/8.6 MB 138.8 MB/s eta 0:00:00 | |
| Downloading numcodecs-0.13.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.9 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.9/8.9 MB 151.5 MB/s eta 0:00:00 | |
| Downloading patsy-1.0.1-py2.py3-none-any.whl (232 kB) | |
| Downloading pygments-2.19.1-py3-none-any.whl (1.2 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 126.9 MB/s eta 0:00:00 | |
| Downloading pynndescent-0.5.13-py3-none-any.whl (56 kB) | |
| Downloading joblib-1.4.2-py3-none-any.whl (301 kB) | |
| Downloading pyogrio-0.10.0-cp311-cp311-manylinux_2_28_x86_64.whl (24.1 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 24.1/24.1 MB 203.6 MB/s eta 0:00:00 | |
| Downloading pyproj-3.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.5 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.5/9.5 MB 78.3 MB/s eta 0:00:00 | |
| Downloading scikit_learn-1.6.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.5 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 13.5/13.5 MB 137.8 MB/s eta 0:00:00 | |
| Downloading seaborn-0.13.2-py3-none-any.whl (294 kB) | |
| Downloading six-1.17.0-py2.py3-none-any.whl (11 kB) | |
| Downloading smmap-5.0.2-py3-none-any.whl (24 kB) | |
| Downloading statsmodels-0.14.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (10.8 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.8/10.8 MB 129.2 MB/s eta 0:00:00 | |
| Downloading tifffile-2024.12.12-py3-none-any.whl (227 kB) | |
| Downloading umap_learn-0.5.7-py3-none-any.whl (88 kB) | |
| Downloading wrapt-1.17.0-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (83 kB) | |
| Downloading xarray_dataclasses-1.9.1-py3-none-any.whl (14 kB) | |
| Downloading xarray-2024.11.0-py3-none-any.whl (1.2 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 133.4 MB/s eta 0:00:00 | |
| Downloading zipp-3.21.0-py3-none-any.whl (9.6 kB) | |
| Downloading fasteners-0.19-py3-none-any.whl (18 kB) | |
| Downloading pyarrow_hotfix-0.6-py3-none-any.whl (7.9 kB) | |
| Downloading scikit_image-0.25.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (14.8 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 14.8/14.8 MB 152.4 MB/s eta 0:00:00 | |
| Downloading contourpy-1.3.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (326 kB) | |
| Downloading cycler-0.12.1-py3-none-any.whl (8.3 kB) | |
| Downloading dask_expr-1.1.21-py3-none-any.whl (244 kB) | |
| Downloading fonttools-4.55.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.9 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.9/4.9 MB 203.0 MB/s eta 0:00:00 | |
| Downloading imageio-2.36.1-py3-none-any.whl (315 kB) | |
| Downloading kiwisolver-1.4.8-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.4 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.4/1.4 MB 105.7 MB/s eta 0:00:00 | |
| Downloading lazy_loader-0.4-py3-none-any.whl (12 kB) | |
| Downloading mdurl-0.1.2-py3-none-any.whl (10.0 kB) | |
| Downloading pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl (4.5 MB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.5/4.5 MB 157.1 MB/s eta 0:00:00 | |
| Downloading pyparsing-3.2.1-py3-none-any.whl (107 kB) | |
| Downloading slicerator-1.1.0-py3-none-any.whl (10 kB) | |
| Downloading threadpoolctl-3.5.0-py3-none-any.whl (18 kB) | |
| Downloading colorcet-3.1.0-py3-none-any.whl (260 kB) | |
| Downloading multipledispatch-1.0.0-py3-none-any.whl (12 kB) | |
| Downloading param-2.2.0-py3-none-any.whl (119 kB) | |
| Downloading pyct-0.5.0-py2.py3-none-any.whl (15 kB) | |
| Downloading stdlib_list-0.11.0-py3-none-any.whl (83 kB) | |
| Building wheels for collected packages: cellxgene-census-builder, cellxgene-census, tiledbsoma, pims, asciitree, session-info | |
| Building editable for cellxgene-census-builder (pyproject.toml): started | |
| Building editable for cellxgene-census-builder (pyproject.toml): finished with status 'done' | |
| Created wheel for cellxgene-census-builder: filename=cellxgene_census_builder-1.16.3.dev82+g3a6229d-py3-none-any.whl size=4906 sha256=bc42752e9411d1a175d12b926316bf575ac7dea2f1228c9331faeaf8730165c2 | |
| Stored in directory: /tmp/pip-ephem-wheel-cache-dgq88jy8/wheels/e7/7b/c2/c85fe6ddb2aeb200fcb106278b8eb8e95c228da8cb7599fd63 | |
| Building wheel for cellxgene-census (pyproject.toml): started | |
| Building wheel for cellxgene-census (pyproject.toml): finished with status 'done' | |
| Created wheel for cellxgene-census: filename=cellxgene_census-1.16.3.dev82+g3a6229d-py3-none-any.whl size=54987 sha256=ba008827a7cfe6e18cbad5ce7799926b45d529e273134a8509d0cfd316d259d4 | |
| Stored in directory: /tmp/pip-ephem-wheel-cache-dgq88jy8/wheels/ee/33/4e/b86144adf6b094cd7f2c1e55f41779ea88987971d507f15e03 | |
| Building wheel for tiledbsoma (pyproject.toml): started | |
| Building wheel for tiledbsoma (pyproject.toml): finished with status 'error' | |
| error: subprocess-exited-with-error | |
| × Building wheel for tiledbsoma (pyproject.toml) did not run successfully. | |
| │ exit code: 1 | |
| ╰─> [311 lines of output] | |
| running bdist_wheel | |
| Build with TileDB: /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/dist | |
| Building Release build | |
| -- Using default install prefix /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/dist. To control CMAKE_INSTALL_PREFIX, set OVERRIDE_INSTALL_PREFIX=OFF | |
| -- Install prefix is /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/dist. | |
| -- The C compiler identification is GNU 12.2.0 | |
| -- The CXX compiler identification is GNU 12.2.0 | |
| -- Detecting C compiler ABI info | |
| -- Detecting C compiler ABI info - done | |
| -- Check for working C compiler: /usr/bin/cc - skipped | |
| -- Detecting C compile features | |
| -- Detecting C compile features - done | |
| -- Detecting CXX compiler ABI info | |
| -- Detecting CXX compiler ABI info - done | |
| -- Check for working CXX compiler: /usr/bin/c++ - skipped | |
| -- Detecting CXX compile features | |
| -- Detecting CXX compile features - done | |
| -- Starting TileDB-SOMA superbuild. | |
| -- Could NOT find TileDB (missing: TileDB_DIR) | |
| -- Adding TileDB as an external project | |
| -- Could NOT find spdlog (missing: spdlog_DIR) | |
| -- Adding spdlog as an external project | |
| -- Not found clang-tidy | |
| -- Not found clang-format | |
| -- Configuring done (0.3s) | |
| -- Generating done (0.0s) | |
| -- Build files have been written to: /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/build | |
| [ 4%] Creating directories for 'ep_tiledb' | |
| [ 8%] Performing download step (download, verify and extract) for 'ep_tiledb' | |
| -- ep_tiledb download command succeeded. See also /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/build/externals/src/ep_tiledb-stamp/ep_tiledb-download-*.log | |
| [ 12%] No update step for 'ep_tiledb' | |
| [ 16%] No patch step for 'ep_tiledb' | |
| [ 20%] No configure step for 'ep_tiledb' | |
| [ 24%] No build step for 'ep_tiledb' | |
| [ 28%] Performing install step for 'ep_tiledb' | |
| [ 32%] No test step for 'ep_tiledb' | |
| [ 36%] Completed 'ep_tiledb' | |
| [ 36%] Built target ep_tiledb | |
| [ 40%] Creating directories for 'ep_spdlog' | |
| [ 44%] Performing download step (download, verify and extract) for 'ep_spdlog' | |
| -- ep_spdlog download command succeeded. See also /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log | |
| [ 48%] No update step for 'ep_spdlog' | |
| [ 52%] No patch step for 'ep_spdlog' | |
| [ 56%] Performing configure step for 'ep_spdlog' | |
| -- ep_spdlog configure command succeeded. See also /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/build/externals/src/ep_spdlog-stamp/ep_spdlog-configure-*.log | |
| [ 60%] Performing build step for 'ep_spdlog' | |
| -- ep_spdlog build command succeeded. See also /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/build/externals/src/ep_spdlog-stamp/ep_spdlog-build-*.log | |
| [ 64%] Performing install step for 'ep_spdlog' | |
| -- ep_spdlog install command succeeded. See also /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/build/externals/src/ep_spdlog-stamp/ep_spdlog-install-*.log | |
| [ 68%] Completed 'ep_spdlog' | |
| [ 68%] Built target ep_spdlog | |
| [ 72%] Creating directories for 'libtiledbsoma' | |
| [ 76%] No download step for 'libtiledbsoma' | |
| [ 80%] No update step for 'libtiledbsoma' | |
| [ 84%] No patch step for 'libtiledbsoma' | |
| [ 88%] Performing configure step for 'libtiledbsoma' | |
| -- Using default install prefix /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/dist. To control CMAKE_INSTALL_PREFIX, set OVERRIDE_INSTALL_PREFIX=OFF | |
| -- Install prefix is /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/dist. | |
| -- The C compiler identification is GNU 12.2.0 | |
| -- The CXX compiler identification is GNU 12.2.0 | |
| -- Detecting C compiler ABI info | |
| -- Detecting C compiler ABI info - done | |
| -- Check for working C compiler: /usr/bin/cc - skipped | |
| -- Detecting C compile features | |
| -- Detecting C compile features - done | |
| -- Detecting CXX compiler ABI info | |
| -- Detecting CXX compiler ABI info - done | |
| -- Check for working CXX compiler: /usr/bin/c++ - skipped | |
| -- Detecting CXX compile features | |
| -- Detecting CXX compile features - done | |
| -- Starting TileDB-SOMA regular build. | |
| -- Performing Test HAVE_AVX2 | |
| -- Performing Test HAVE_AVX2 - Success | |
| -- Found TileDB: /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/build/externals/install/lib/libtiledb.so.2.27 | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success | |
| -- Found Threads: TRUE | |
| -- Starting TileDB-SOMA build. | |
| -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY | |
| -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success | |
| -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY | |
| -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success | |
| -- Performing Test COMPILER_HAS_DEPRECATED_ATTR | |
| -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success | |
| -- Performing Test HAVE_FLAG__ffile_prefix_map__tmp_pip_install_ai4b2ltw_tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e_build_libtiledbsoma__deps_catch2_src__ | |
| -- Performing Test HAVE_FLAG__ffile_prefix_map__tmp_pip_install_ai4b2ltw_tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e_build_libtiledbsoma__deps_catch2_src__ - Success | |
| -- Configuring done (3.1s) | |
| -- Generating done (0.0s) | |
| -- Build files have been written to: /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/build/libtiledbsoma | |
| [ 92%] Performing build step for 'libtiledbsoma' | |
| [ 1%] Building CXX object src/CMakeFiles/TILEDBSOMA_NANOARROW_OBJECT.dir/external/src/nanoarrow/nanoarrow.c.o | |
| [ 2%] Building CXX object src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/reindexer/reindexer.cc.o | |
| [ 2%] Building CXX object src/CMakeFiles/TILEDB_SOMA_GEOMETRY_OBJECTS.dir/geometry/point.cc.o | |
| [ 4%] Building CXX object src/CMakeFiles/TILEDB_SOMA_GEOMETRY_OBJECTS.dir/geometry/linestring.cc.o | |
| [ 5%] Building CXX object src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/soma/soma_array.cc.o | |
| [ 5%] Building CXX object src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/soma/managed_query.cc.o | |
| [ 6%] Building CXX object src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/soma/soma_group.cc.o | |
| [ 6%] Building CXX object src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/soma/soma_object.cc.o | |
| [ 6%] Building CXX object src/CMakeFiles/TILEDB_SOMA_GEOMETRY_OBJECTS.dir/geometry/polygon.cc.o | |
| [ 6%] Building CXX object src/CMakeFiles/TILEDB_SOMA_GEOMETRY_OBJECTS.dir/geometry/multipoint.cc.o | |
| [ 7%] Building CXX object src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/soma/soma_column.cc.o | |
| [ 7%] Building CXX object src/CMakeFiles/TILEDB_SOMA_GEOMETRY_OBJECTS.dir/geometry/multipolygon.cc.o | |
| [ 9%] Building CXX object src/CMakeFiles/TILEDB_SOMA_GEOMETRY_OBJECTS.dir/geometry/multilinestring.cc.o | |
| [ 9%] Building CXX object src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/soma/soma_dimension.cc.o | |
| [ 9%] Building CXX object src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/soma/soma_attribute.cc.o | |
| [ 9%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/benchmark/catch_chronometer.cpp.o | |
| In file included from /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/libtiledbsoma/src/soma/soma_column.cc:33: | |
| /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/libtiledbsoma/src/soma/soma_column.h:40:10: fatal error: format: No such file or directory | |
| 40 | #include <format> | |
| | ^~~~~~~~ | |
| compilation terminated. | |
| gmake[5]: *** [src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/build.make:149: src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/soma/soma_column.cc.o] Error 1 | |
| gmake[5]: *** Waiting for unfinished jobs.... | |
| [ 10%] Building CXX object src/CMakeFiles/TILEDB_SOMA_GEOMETRY_OBJECTS.dir/geometry/operators/io/read.cc.o | |
| In file included from /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/libtiledbsoma/src/soma/soma_array.cc:32: | |
| /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/libtiledbsoma/src/soma/soma_array.h:38:10: fatal error: format: No such file or directory | |
| 38 | #include <format> | |
| | ^~~~~~~~ | |
| compilation terminated. | |
| gmake[5]: *** [src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/build.make:107: src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/soma/soma_array.cc.o] Error 1 | |
| [ 11%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_benchmark_function.cpp.o | |
| [ 12%] Building CXX object src/CMakeFiles/TILEDB_SOMA_GEOMETRY_OBJECTS.dir/geometry/operators/io/write.cc.o | |
| [ 12%] Building CXX object src/CMakeFiles/TILEDB_SOMA_GEOMETRY_OBJECTS.dir/geometry/operators/envelope.cc.o | |
| [ 12%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_run_for_at_least.cpp.o | |
| [ 13%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_stats.cpp.o | |
| [ 13%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/generators/catch_generator_exception.cpp.o | |
| [ 14%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/generators/catch_generators.cpp.o | |
| [ 15%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/generators/catch_generators_random.cpp.o | |
| [ 15%] Built target TILEDBSOMA_NANOARROW_OBJECT | |
| [ 15%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_automake.cpp.o | |
| [ 16%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_common_base.cpp.o | |
| In file included from /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/libtiledbsoma/src/soma/soma_object.cc:5: | |
| /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/libtiledbsoma/src/soma/soma_array.h:38:10: fatal error: format: No such file or directory | |
| 38 | #include <format> | |
| | ^~~~~~~~ | |
| compilation terminated. | |
| In file included from /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/libtiledbsoma/src/soma/soma_attribute.h:43, | |
| from /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/libtiledbsoma/src/soma/soma_attribute.cc:33: | |
| /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/libtiledbsoma/src/soma/soma_column.h:40:10: fatal error: format: No such file or directory | |
| 40 | #include <format> | |
| | ^~~~~~~~ | |
| In file included from /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/libtiledbsoma/src/soma/soma_dimension.h:43, | |
| from /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/libtiledbsoma/src/soma/soma_dimension.cc:33: | |
| /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/libtiledbsoma/src/soma/soma_column.h:40:10: fatal error: format: No such file or directory | |
| 40 | #include <format> | |
| | ^~~~~~~~ | |
| compilation terminated. | |
| compilation terminated. | |
| gmake[5]: *** [src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/build.make:177: src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/soma/soma_dimension.cc.o] Error 1 | |
| gmake[5]: *** [src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/build.make:163: src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/soma/soma_attribute.cc.o] Error 1 | |
| gmake[5]: *** [src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/build.make:135: src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/soma/soma_object.cc.o] Error 1 | |
| [ 16%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_compact.cpp.o | |
| [ 17%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_console.cpp.o | |
| [ 18%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_cumulative_base.cpp.o | |
| [ 18%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_event_listener.cpp.o | |
| /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/libtiledbsoma/src/soma/managed_query.cc:37:10: fatal error: format: No such file or directory | |
| 37 | #include <format> | |
| | ^~~~~~~~ | |
| compilation terminated. | |
| gmake[5]: *** [src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/build.make:93: src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/soma/managed_query.cc.o] Error 1 | |
| [ 19%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_helpers.cpp.o | |
| [ 19%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_junit.cpp.o | |
| In file included from /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/build/externals/install/include/spdlog/common.h:50, | |
| from /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/build/externals/install/include/spdlog/spdlog.h:12, | |
| from /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/libtiledbsoma/src/utils/logger.h:54, | |
| from /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/libtiledbsoma/src/reindexer/reindexer.cc:41: | |
| /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/build/externals/install/include/spdlog/fmt/fmt.h:15:14: fatal error: format: No such file or directory | |
| 15 | #include <format> | |
| | ^~~~~~~~ | |
| compilation terminated. | |
| gmake[5]: *** [src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/build.make:79: src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/reindexer/reindexer.cc.o] Error 1 | |
| [ 20%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_multi.cpp.o | |
| [ 21%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_registrars.cpp.o | |
| [ 21%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_sonarqube.cpp.o | |
| [ 22%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_streaming_base.cpp.o | |
| [ 22%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_tap.cpp.o | |
| [ 23%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_teamcity.cpp.o | |
| [ 24%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_xml.cpp.o | |
| [ 24%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/interfaces/catch_interfaces_capture.cpp.o | |
| [ 25%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/interfaces/catch_interfaces_config.cpp.o | |
| [ 25%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/interfaces/catch_interfaces_exception.cpp.o | |
| [ 26%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/interfaces/catch_interfaces_generatortracker.cpp.o | |
| [ 26%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/interfaces/catch_interfaces_registry_hub.cpp.o | |
| [ 27%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/interfaces/catch_interfaces_reporter_factory.cpp.o | |
| [ 28%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/interfaces/catch_interfaces_reporter.cpp.o | |
| [ 28%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/interfaces/catch_interfaces_testcase.cpp.o | |
| [ 29%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/catch_approx.cpp.o | |
| [ 29%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/catch_assertion_result.cpp.o | |
| [ 29%] Built target TILEDB_SOMA_GEOMETRY_OBJECTS | |
| [ 30%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/catch_config.cpp.o | |
| [ 31%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/catch_get_random_seed.cpp.o | |
| [ 31%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/catch_message.cpp.o | |
| [ 31%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/catch_session.cpp.o | |
| [ 32%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/catch_tag_alias_autoregistrar.cpp.o | |
| [ 33%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/catch_registry_hub.cpp.o | |
| [ 34%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/catch_test_case_info.cpp.o | |
| [ 34%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/catch_test_spec.cpp.o | |
| [ 35%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/catch_timer.cpp.o | |
| [ 35%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/catch_tostring.cpp.o | |
| [ 36%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/catch_totals.cpp.o | |
| [ 37%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/catch_translate_exception.cpp.o | |
| [ 37%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/catch_version.cpp.o | |
| [ 38%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_assertion_handler.cpp.o | |
| [ 38%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_case_insensitive_comparisons.cpp.o | |
| [ 39%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_clara.cpp.o | |
| [ 39%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_commandline.cpp.o | |
| [ 40%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_console_colour.cpp.o | |
| [ 41%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_context.cpp.o | |
| [ 41%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_debug_console.cpp.o | |
| [ 42%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_debugger.cpp.o | |
| [ 42%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_decomposer.cpp.o | |
| [ 43%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_enforce.cpp.o | |
| [ 44%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_enum_values_registry.cpp.o | |
| [ 44%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_errno_guard.cpp.o | |
| [ 45%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_exception_translator_registry.cpp.o | |
| [ 46%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_floating_point_helpers.cpp.o | |
| [ 46%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_fatal_condition_handler.cpp.o | |
| [ 47%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_getenv.cpp.o | |
| [ 47%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_istream.cpp.o | |
| [ 48%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_lazy_expr.cpp.o | |
| [ 48%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_leak_detector.cpp.o | |
| [ 49%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_list.cpp.o | |
| [ 50%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_message_info.cpp.o | |
| [ 50%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_output_redirect.cpp.o | |
| [ 51%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_parse_numbers.cpp.o | |
| [ 51%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_polyfills.cpp.o | |
| [ 52%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_random_number_generator.cpp.o | |
| [ 53%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_random_seed_generation.cpp.o | |
| [ 53%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_reporter_registry.cpp.o | |
| [ 54%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_reporter_spec_parser.cpp.o | |
| [ 54%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_result_type.cpp.o | |
| Building wheel for pims (setup.py): started | |
| [ 55%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_reusable_string_stream.cpp.o | |
| [ 55%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_run_context.cpp.o | |
| [ 56%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_section.cpp.o | |
| [ 57%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_singletons.cpp.o | |
| [ 57%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_source_line_info.cpp.o | |
| [ 58%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_startup_exception_registry.cpp.o | |
| [ 58%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_stdstreams.cpp.o | |
| [ 59%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_string_manip.cpp.o | |
| [ 60%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_stringref.cpp.o | |
| [ 60%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_tag_alias_registry.cpp.o | |
| [ 61%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_test_case_info_hasher.cpp.o | |
| [ 61%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_test_case_registry_impl.cpp.o | |
| [ 62%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_test_case_tracker.cpp.o | |
| [ 63%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_test_failure_exception.cpp.o | |
| [ 63%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_test_registry.cpp.o | |
| [ 64%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_test_spec_parser.cpp.o | |
| [ 64%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_textflow.cpp.o | |
| [ 65%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_uncaught_exceptions.cpp.o | |
| [ 66%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_wildcard_pattern.cpp.o | |
| [ 66%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/internal/catch_xmlwriter.cpp.o | |
| [ 67%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/matchers/catch_matchers.cpp.o | |
| [ 67%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/matchers/catch_matchers_container_properties.cpp.o | |
| [ 68%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/matchers/catch_matchers_exception.cpp.o | |
| [ 68%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/matchers/catch_matchers_floating_point.cpp.o | |
| [ 69%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/matchers/catch_matchers_predicate.cpp.o | |
| [ 70%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/matchers/catch_matchers_quantifiers.cpp.o | |
| [ 70%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/matchers/catch_matchers_string.cpp.o | |
| [ 71%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/matchers/catch_matchers_templated.cpp.o | |
| [ 71%] Building CXX object _deps/catch2-build/src/CMakeFiles/Catch2.dir/catch2/matchers/internal/catch_matchers_impl.cpp.o | |
| gmake[4]: *** [CMakeFiles/Makefile2:253: src/CMakeFiles/TILEDB_SOMA_OBJECTS.dir/all] Error 2 | |
| gmake[4]: *** Waiting for unfinished jobs.... | |
| [ 72%] Linking CXX static library libCatch2.a | |
| [ 72%] Built target Catch2 | |
| gmake[3]: *** [Makefile:146: all] Error 2 | |
| gmake[2]: *** [CMakeFiles/libtiledbsoma.dir/build.make:86: libtiledbsoma-prefix/src/libtiledbsoma-stamp/libtiledbsoma-build] Error 2 | |
| gmake[1]: *** [CMakeFiles/Makefile2:158: CMakeFiles/libtiledbsoma.dir/all] Error 2 | |
| gmake: *** [Makefile:91: all] Error 2 | |
| Checking: /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/dist/lib/libtiledbsoma.so exists: False | |
| Checking: /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/dist/lib64/libtiledbsoma.so exists: False | |
| Checking: /tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/dist/lib/x86_64-linux-gnu/libtiledbsoma.so exists: False | |
| libtiledbsoma.so: cannot open shared object file: No such file or directory | |
| Traceback (most recent call last): | |
| File "/usr/local/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module> | |
| main() | |
| File "/usr/local/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main | |
| json_out['return_val'] = hook(**hook_input['kwargs']) | |
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ | |
| File "/usr/local/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 251, in build_wheel | |
| return _build_backend().build_wheel(wheel_directory, config_settings, | |
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ | |
| File "/tmp/pip-build-env-ikf2g_t1/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 438, in build_wheel | |
| return _build(['bdist_wheel', '--dist-info-dir', str(metadata_directory)]) | |
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ | |
| File "/tmp/pip-build-env-ikf2g_t1/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 426, in _build | |
| return self._build_with_temp_dir( | |
| ^^^^^^^^^^^^^^^^^^^^^^^^^^ | |
| File "/tmp/pip-build-env-ikf2g_t1/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 407, in _build_with_temp_dir | |
| self.run_setup() | |
| File "/tmp/pip-build-env-ikf2g_t1/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 320, in run_setup | |
| exec(code, locals()) | |
| File "<string>", line 274, in <module> | |
| File "/tmp/pip-build-env-ikf2g_t1/overlay/lib/python3.11/site-packages/setuptools/__init__.py", line 117, in setup | |
| return distutils.core.setup(**attrs) | |
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ | |
| File "/tmp/pip-build-env-ikf2g_t1/overlay/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 186, in setup | |
| return run_commands(dist) | |
| ^^^^^^^^^^^^^^^^^^ | |
| File "/tmp/pip-build-env-ikf2g_t1/overlay/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 202, in run_commands | |
| dist.run_commands() | |
| File "/tmp/pip-build-env-ikf2g_t1/overlay/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 983, in run_commands | |
| self.run_command(cmd) | |
| File "/tmp/pip-build-env-ikf2g_t1/overlay/lib/python3.11/site-packages/setuptools/dist.py", line 999, in run_command | |
| super().run_command(command) | |
| File "/tmp/pip-build-env-ikf2g_t1/overlay/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 1002, in run_command | |
| cmd_obj.run() | |
| File "<string>", line 226, in run | |
| File "<string>", line 188, in find_or_build_package_data | |
| File "/usr/local/lib/python3.11/subprocess.py", line 571, in run | |
| raise CalledProcessError(retcode, process.args, | |
| subprocess.CalledProcessError: Command '['./bld', '--tiledb=/tmp/pip-install-ai4b2ltw/tiledbsoma_e354a44ca8e34ea0bb56a05140057e8e/dist']' returned non-zero exit status 2. | |
| [end of output] | |
| note: This error originates from a subprocess, and is likely not a problem with pip. | |
| ERROR: Failed building wheel for tiledbsoma | |
| Building wheel for pims (setup.py): finished with status 'done' | |
| Created wheel for pims: filename=PIMS-0.7-py3-none-any.whl size=84590 sha256=adaa967e84d505a7d48413726a26f33d48c2fed679d97578350eb81ae3e21937 | |
| Stored in directory: /root/.cache/pip/wheels/19/dc/d2/e872d34a5e460ff64d2f916938044498fc123855a68318b9d5 | |
| Building wheel for asciitree (setup.py): started | |
| Building wheel for asciitree (setup.py): finished with status 'done' | |
| Created wheel for asciitree: filename=asciitree-0.3.3-py3-none-any.whl size=5033 sha256=e9a5ba5528a86221bf8fbef1f32b8120d62b351245c7bcc3e3e14c816bf5e075 | |
| Stored in directory: /root/.cache/pip/wheels/71/c1/da/23077eb3b87d24d6f3852ed1ed1a1ac2d3c885ad6ebd2b4a07 | |
| Building wheel for session-info (setup.py): started | |
| Building wheel for session-info (setup.py): finished with status 'done' | |
| Created wheel for session-info: filename=session_info-1.0.0-py3-none-any.whl size=8026 sha256=79709f79033e9bb7ea7c1e0f0a3c0ba5c849931dfe22080bdcb091461a26e0d6 | |
| Stored in directory: /root/.cache/pip/wheels/4e/56/35/a748fc57279a4b84d0b332879445fed1ad8478e7257986b015 | |
| Successfully built cellxgene-census-builder cellxgene-census pims asciitree session-info | |
| Failed to build tiledbsoma | |
| ERROR: ERROR: Failed to build installable wheels for some pyproject.toml based projects (tiledbsoma) | |
| time="2025-01-09T19:03:13 UTC" level=info msg="sub-process exited" argo=true error="<nil>" | |
| Error: exit status 1 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment