hiraksarkar · September 9, 2023 16:54 · Sep 9, 2023
diff --git a/della_princeton_jupyter_slurm.sh b/della_princeton_jupyter_slurm.sh
@@ -0,0 +1,39 @@
+#!/bin/bash
+#SBATCH --mincpus 16
+#SBATCH --mem 64G
+#SBATCH --time 5:00:00
+#SBATCH --job-name mendel
+#SBATCH --mail-type=begin        # send email when job begins
+#SBATCH --mail-type=end          # send email when job ends
+#SBATCH --mail-user=hs0424@princeton.edu
+#SBATCH --output jupyter_logs/jupyter-notebook-%J.log
+# get tunneling info
+XDG_RUNTIME_DIR=""
+port=$(shuf -i10001-20000 -n1)
+node=$(hostname -s)
+user=$(whoami)
+cluster="della"
+# print tunneling instructions jupyter-log
+echo -e "
+MacOS or linux terminal command to create your ssh tunnel
+ssh -N -L ${port}:${node}:${port} ${user}@${cluster}.princeton.edu
+Windows MobaXterm info
+Forwarded port:same as remote port
+Remote server: ${node}
+Remote port: ${port}
+SSH server: ${cluster}.cs.princeton.edu
+SSH login: $user
+SSH port: 22
+Use a Browser on your local machine to go to:
+localhost:${port}  (prefix w/ https:// if using password)
+"
+# load modules or conda environments here
+# uncomment the following two lines to use your conda environment called notebook_env
+source /scratch/gpfs/KANG/hirak/mambaforge/bin/activate base
+conda activate r42
+# conda activate spagcn
+# conda activate py-stagate
+cd /scratch/gpfs/KANG/hirak/mendel/Projects/neuroblastoma_analysis/notebook
+# DON'T USE ADDRESS BELOW.
+# DO USE TOKEN BELOW
+jupyter lab --no-browser --port=${port} --ip=${node}