GNU Stow doesn't like to replace (or remove) cache files like share/glib-2.0/gschemas.compiled and share/icons/hicolor/icon-theme.cache.
If another package installed those, but the package you're trying to stow has its own, you'll get an error like this:
$ sudo stow seahorse-41.0/
WARNING! stowing seahorse-41.0 would cause conflicts:
* existing target is neither a link nor a directory: share/glib-2.0/schemas/gschemas.compiled
* existing target is neither a link nor a directory: share/icons/hicolor/icon-theme.cache
All operations aborted.