Skip to content

Instantly share code, notes, and snippets.

@cmdcolin

cmdcolin/out.tsv

Last active March 9, 2025 17:24
Show Gist options
  • Save cmdcolin/5ef6d0ab5d7731ef1e61a8b42ec01955 to your computer and use it in GitHub Desktop.
Save cmdcolin/5ef6d0ab5d7731ef1e61a8b42ec01955 to your computer and use it in GitHub Desktop.
Download ZIP
plot.R
Raw
out.tsv
program size time mean sd
biojsmsa 1024 1.7980085814 1.7634212551000001 0.054614392814706154
biojsmsa 1024 1.7561014924 1.7634212551000001 0.054614392814706154
biojsmsa 1024 1.7711577354 1.7634212551000001 0.054614392814706154
biojsmsa 1024 1.6753254374000002 1.7634212551000001 0.054614392814706154
biojsmsa 1024 1.7957582314 1.7634212551000001 0.054614392814706154
biojsmsa 1024 1.8305949124 1.7634212551000001 0.054614392814706154
biojsmsa 1024 1.8173887264 1.7634212551000001 0.054614392814706154
biojsmsa 1024 1.7924422974 1.7634212551000001 0.054614392814706154
biojsmsa 1024 1.6920777054 1.7634212551000001 0.054614392814706154
biojsmsa 1024 1.7053574314 1.7634212551000001 0.054614392814706154
biojsmsa 128 1.6373483794400001 1.54710113104 0.04568599034397613
biojsmsa 128 1.56394749144 1.54710113104 0.04568599034397613
biojsmsa 128 1.57501847644 1.54710113104 0.04568599034397613
biojsmsa 128 1.4940031494400001 1.54710113104 0.04568599034397613
biojsmsa 128 1.5335850394400001 1.54710113104 0.04568599034397613
biojsmsa 128 1.54655219444 1.54710113104 0.04568599034397613
biojsmsa 128 1.51453998144 1.54710113104 0.04568599034397613
biojsmsa 128 1.5166358294400002 1.54710113104 0.04568599034397613
biojsmsa 128 1.59251702644 1.54710113104 0.04568599034397613
biojsmsa 128 1.49686374244 1.54710113104 0.04568599034397613
biojsmsa 16384 9.7150072695 9.611480310800001 0.14579783118284922
biojsmsa 16384 9.5182054055 9.611480310800001 0.14579783118284922
biojsmsa 16384 9.8678806945 9.611480310800001 0.14579783118284922
biojsmsa 16384 9.781600122499999 9.611480310800001 0.14579783118284922
biojsmsa 16384 9.662714767499999 9.611480310800001 0.14579783118284922
biojsmsa 16384 9.5309891025 9.611480310800001 0.14579783118284922
biojsmsa 16384 9.4101363235 9.611480310800001 0.14579783118284922
biojsmsa 16384 9.4939313205 9.611480310800001 0.14579783118284922
biojsmsa 16384 9.6372589075 9.611480310800001 0.14579783118284922
biojsmsa 16384 9.4970791945 9.611480310800001 0.14579783118284922
biojsmsa 2048 1.9026339573 1.9050012581 0.05986234144239132
biojsmsa 2048 1.8469118923 1.9050012581 0.05986234144239132
biojsmsa 2048 1.9069666753 1.9050012581 0.05986234144239132
biojsmsa 2048 1.8663322833000002 1.9050012581 0.05986234144239132
biojsmsa 2048 2.0008028333 1.9050012581 0.05986234144239132
biojsmsa 2048 2.0178010853 1.9050012581 0.05986234144239132
biojsmsa 2048 1.9178567263000001 1.9050012581 0.05986234144239132
biojsmsa 2048 1.8716199003000002 1.9050012581 0.05986234144239132
biojsmsa 2048 1.8541467393 1.9050012581 0.05986234144239132
biojsmsa 2048 1.8649404883000003 1.9050012581 0.05986234144239132
biojsmsa 256 1.9864683829800003 1.6610976214800002 0.12858366752513115
biojsmsa 256 1.6042772549800002 1.6610976214800002 0.12858366752513115
biojsmsa 256 1.6791783189800003 1.6610976214800002 0.12858366752513115
biojsmsa 256 1.6697188549800002 1.6610976214800002 0.12858366752513115
biojsmsa 256 1.6247532629800001 1.6610976214800002 0.12858366752513115
biojsmsa 256 1.6785917189800001 1.6610976214800002 0.12858366752513115
biojsmsa 256 1.5896393439800003 1.6610976214800002 0.12858366752513115
biojsmsa 256 1.51393384798 1.6610976214800002 0.12858366752513115
biojsmsa 256 1.56420676998 1.6610976214800002 0.12858366752513115
biojsmsa 256 1.7002084589800002 1.6610976214800002 0.12858366752513115
biojsmsa 4096 2.4399516512 2.4638147263 0.07270532117959781
biojsmsa 4096 2.5878772932 2.4638147263 0.07270532117959781
biojsmsa 4096 2.3892157362 2.4638147263 0.07270532117959781
biojsmsa 4096 2.4037412082 2.4638147263 0.07270532117959781
biojsmsa 4096 2.3996446192 2.4638147263 0.07270532117959781
biojsmsa 4096 2.5855292192 2.4638147263 0.07270532117959781
biojsmsa 4096 2.5022912541999998 2.4638147263 0.07270532117959781
biojsmsa 4096 2.4268974212 2.4638147263 0.07270532117959781
biojsmsa 4096 2.4649323322 2.4638147263 0.07270532117959781
biojsmsa 4096 2.4380665282 2.4638147263 0.07270532117959781
biojsmsa 512 1.6455820745999998 1.6249936198000001 0.03572417313965839
biojsmsa 512 1.5988739256 1.6249936198000001 0.03572417313965839
biojsmsa 512 1.6336759596 1.6249936198000001 0.03572417313965839
biojsmsa 512 1.6154679406 1.6249936198000001 0.03572417313965839
biojsmsa 512 1.6328914406 1.6249936198000001 0.03572417313965839
biojsmsa 512 1.7098914085999999 1.6249936198000001 0.03572417313965839
biojsmsa 512 1.5992604476 1.6249936198000001 0.03572417313965839
biojsmsa 512 1.6036062415999999 1.6249936198000001 0.03572417313965839
biojsmsa 512 1.5824107136 1.6249936198000001 0.03572417313965839
biojsmsa 512 1.6282760456 1.6249936198000001 0.03572417313965839
biojsmsa 8192 3.9829433992400003 4.0606929339399995 0.0991498238172992
biojsmsa 8192 4.192809421240001 4.0606929339399995 0.0991498238172992
biojsmsa 8192 3.94867381724 4.0606929339399995 0.0991498238172992
biojsmsa 8192 3.91551979024 4.0606929339399995 0.0991498238172992
biojsmsa 8192 4.170104821240001 4.0606929339399995 0.0991498238172992
biojsmsa 8192 4.02106132124 4.0606929339399995 0.0991498238172992
biojsmsa 8192 4.072544429240001 4.0606929339399995 0.0991498238172992
biojsmsa 8192 4.13928024524 4.0606929339399995 0.0991498238172992
biojsmsa 8192 4.00923887224 4.0606929339399995 0.0991498238172992
biojsmsa 8192 4.15475322224 4.0606929339399995 0.0991498238172992
jalviewjs 1024 26.569431130599998 24.779926694 1.088917551905917
jalviewjs 1024 23.9620928766 24.779926694 1.088917551905917
jalviewjs 1024 25.1432492586 24.779926694 1.088917551905917
jalviewjs 1024 23.6963351636 24.779926694 1.088917551905917
jalviewjs 1024 23.9964772816 24.779926694 1.088917551905917
jalviewjs 1024 24.3684058196 24.779926694 1.088917551905917
jalviewjs 1024 23.2818434546 24.779926694 1.088917551905917
jalviewjs 1024 25.1430276326 24.779926694 1.088917551905917
jalviewjs 1024 25.5234863746 24.779926694 1.088917551905917
jalviewjs 1024 26.1149179476 24.779926694 1.088917551905917
jalviewjs 128 23.648991978420003 22.56361390232 2.375266100634711
jalviewjs 128 23.577286298420002 22.56361390232 2.375266100634711
jalviewjs 128 20.483770312420003 22.56361390232 2.375266100634711
jalviewjs 128 21.670154563420002 22.56361390232 2.375266100634711
jalviewjs 128 22.52799696342 22.56361390232 2.375266100634711
jalviewjs 128 20.792312322420003 22.56361390232 2.375266100634711
jalviewjs 128 20.694701119420003 22.56361390232 2.375266100634711
jalviewjs 128 20.77803418342 22.56361390232 2.375266100634711
jalviewjs 128 28.335018337420003 22.56361390232 2.375266100634711
jalviewjs 128 23.12787294442 22.56361390232 2.375266100634711
jalviewjs 2048 22.99708339036 28.991100396260002 6.249493598160791
jalviewjs 2048 25.500773465360002 28.991100396260002 6.249493598160791
jalviewjs 2048 37.732918100359996 28.991100396260002 6.249493598160791
jalviewjs 2048 24.55534458636 28.991100396260002 6.249493598160791
jalviewjs 2048 24.35232610236 28.991100396260002 6.249493598160791
jalviewjs 2048 40.190919013359995 28.991100396260002 6.249493598160791
jalviewjs 2048 25.16869340936 28.991100396260002 6.249493598160791
jalviewjs 2048 24.53266153536 28.991100396260002 6.249493598160791
jalviewjs 2048 33.45630876736 28.991100396260002 6.249493598160791
jalviewjs 2048 31.42397559236 28.991100396260002 6.249493598160791
jalviewjs 256 21.6134671656 24.0136975712 3.4514621359443955
jalviewjs 256 22.756244497599997 24.0136975712 3.4514621359443955
jalviewjs 256 22.8616403516 24.0136975712 3.4514621359443955
jalviewjs 256 22.9449464756 24.0136975712 3.4514621359443955
jalviewjs 256 30.8342719196 24.0136975712 3.4514621359443955
jalviewjs 256 21.511932850599997 24.0136975712 3.4514621359443955
jalviewjs 256 24.197102608599998 24.0136975712 3.4514621359443955
jalviewjs 256 29.877994511599997 24.0136975712 3.4514621359443955
jalviewjs 256 21.5169814886 24.0136975712 3.4514621359443955
jalviewjs 256 22.0223938426 24.0136975712 3.4514621359443955
jalviewjs 4096 60.46340351698 58.933576017280004 4.723828731408525
jalviewjs 4096 60.29173410598 58.933576017280004 4.723828731408525
jalviewjs 4096 53.43532333398 58.933576017280004 4.723828731408525
jalviewjs 4096 67.41192345498 58.933576017280004 4.723828731408525
jalviewjs 4096 59.32531123198 58.933576017280004 4.723828731408525
jalviewjs 4096 59.45632287898 58.933576017280004 4.723828731408525
jalviewjs 4096 53.02703333498 58.933576017280004 4.723828731408525
jalviewjs 4096 63.36252234098 58.933576017280004 4.723828731408525
jalviewjs 4096 59.85404920898 58.933576017280004 4.723828731408525
jalviewjs 4096 52.70813676498 58.933576017280004 4.723828731408525
jalviewjs 512 22.51271706812 22.57801503762 0.6391833551251149
jalviewjs 512 22.26453736812 22.57801503762 0.6391833551251149
jalviewjs 512 23.58673220212 22.57801503762 0.6391833551251149
jalviewjs 512 22.44126349812 22.57801503762 0.6391833551251149
jalviewjs 512 23.19372035112 22.57801503762 0.6391833551251149
jalviewjs 512 22.52158180812 22.57801503762 0.6391833551251149
jalviewjs 512 23.33076800812 22.57801503762 0.6391833551251149
jalviewjs 512 22.24598584812 22.57801503762 0.6391833551251149
jalviewjs 512 21.39759870012 22.57801503762 0.6391833551251149
jalviewjs 512 22.28524552412 22.57801503762 0.6391833551251149
reactmsaview 1024 1.8689551010800003 1.7419065976800003 0.07925393774379692
reactmsaview 1024 1.8392167480800001 1.7419065976800003 0.07925393774379692
reactmsaview 1024 1.68543780008 1.7419065976800003 0.07925393774379692
reactmsaview 1024 1.7528144170800002 1.7419065976800003 0.07925393774379692
reactmsaview 1024 1.6647063050800002 1.7419065976800003 0.07925393774379692
reactmsaview 1024 1.59927344108 1.7419065976800003 0.07925393774379692
reactmsaview 1024 1.7475011380800003 1.7419065976800003 0.07925393774379692
reactmsaview 1024 1.7300732750800003 1.7419065976800003 0.07925393774379692
reactmsaview 1024 1.76866764408 1.7419065976800003 0.07925393774379692
reactmsaview 1024 1.7624201070800003 1.7419065976800003 0.07925393774379692
reactmsaview 128 1.7709793061599999 1.7168230259599995 0.07521428495363854
reactmsaview 128 1.81692013016 1.7168230259599995 0.07521428495363854
reactmsaview 128 1.8576578581599998 1.7168230259599995 0.07521428495363854
reactmsaview 128 1.65520373316 1.7168230259599995 0.07521428495363854
reactmsaview 128 1.6959896021599998 1.7168230259599995 0.07521428495363854
reactmsaview 128 1.6469654431599998 1.7168230259599995 0.07521428495363854
reactmsaview 128 1.73285747516 1.7168230259599995 0.07521428495363854
reactmsaview 128 1.67550109216 1.7168230259599995 0.07521428495363854
reactmsaview 128 1.66674550016 1.7168230259599995 0.07521428495363854
reactmsaview 128 1.64941011916 1.7168230259599995 0.07521428495363854
reactmsaview 16384 8.51879716 8.7497080646 0.2684940798374038
reactmsaview 16384 9.41055247 8.7497080646 0.2684940798374038
reactmsaview 16384 8.613046233 8.7497080646 0.2684940798374038
reactmsaview 16384 8.573956575 8.7497080646 0.2684940798374038
reactmsaview 16384 8.758634689 8.7497080646 0.2684940798374038
reactmsaview 16384 8.627328996000001 8.7497080646 0.2684940798374038
reactmsaview 16384 9.0057966 8.7497080646 0.2684940798374038
reactmsaview 16384 8.600224377 8.7497080646 0.2684940798374038
reactmsaview 16384 8.701233975000001 8.7497080646 0.2684940798374038
reactmsaview 16384 8.687509571 8.7497080646 0.2684940798374038
reactmsaview 2048 1.87946548666 1.8960053832600003 0.11117118032096922
reactmsaview 2048 1.79012463666 1.8960053832600003 0.11117118032096922
reactmsaview 2048 1.8322383106600002 1.8960053832600003 0.11117118032096922
reactmsaview 2048 1.81598261566 1.8960053832600003 0.11117118032096922
reactmsaview 2048 2.03452741666 1.8960053832600003 0.11117118032096922
reactmsaview 2048 1.91676757266 1.8960053832600003 0.11117118032096922
reactmsaview 2048 1.74705655666 1.8960053832600003 0.11117118032096922
reactmsaview 2048 1.8508175476600002 1.8960053832600003 0.11117118032096922
reactmsaview 2048 2.05397125866 1.8960053832600003 0.11117118032096922
reactmsaview 2048 2.03910243066 1.8960053832600003 0.11117118032096922
reactmsaview 256 1.80523602468 1.82918387578 0.06415313524004164
reactmsaview 256 1.78517200268 1.82918387578 0.06415313524004164
reactmsaview 256 1.93000642168 1.82918387578 0.06415313524004164
reactmsaview 256 1.93797890768 1.82918387578 0.06415313524004164
reactmsaview 256 1.7554254516799999 1.82918387578 0.06415313524004164
reactmsaview 256 1.85835847168 1.82918387578 0.06415313524004164
reactmsaview 256 1.77753486968 1.82918387578 0.06415313524004164
reactmsaview 256 1.85506127268 1.82918387578 0.06415313524004164
reactmsaview 256 1.78015741768 1.82918387578 0.06415313524004164
reactmsaview 256 1.80690791768 1.82918387578 0.06415313524004164
reactmsaview 4096 2.1417815526200004 2.2905278249200003 0.08803022572262914
reactmsaview 4096 2.21838769062 2.2905278249200003 0.08803022572262914
reactmsaview 4096 2.4112178026200004 2.2905278249200003 0.08803022572262914
reactmsaview 4096 2.24829564762 2.2905278249200003 0.08803022572262914
reactmsaview 4096 2.25147769862 2.2905278249200003 0.08803022572262914
reactmsaview 4096 2.32150411362 2.2905278249200003 0.08803022572262914
reactmsaview 4096 2.4411200726200004 2.2905278249200003 0.08803022572262914
reactmsaview 4096 2.31460236862 2.2905278249200003 0.08803022572262914
reactmsaview 4096 2.2745343626200003 2.2905278249200003 0.08803022572262914
reactmsaview 4096 2.28235693962 2.2905278249200003 0.08803022572262914
reactmsaview 512 1.79046319568 1.80379856528 0.07077719133186296
reactmsaview 512 1.9388567136800001 1.80379856528 0.07077719133186296
reactmsaview 512 1.76839383468 1.80379856528 0.07077719133186296
reactmsaview 512 1.76038481768 1.80379856528 0.07077719133186296
reactmsaview 512 1.74642715368 1.80379856528 0.07077719133186296
reactmsaview 512 1.78621990368 1.80379856528 0.07077719133186296
reactmsaview 512 1.7805868256800002 1.80379856528 0.07077719133186296
reactmsaview 512 1.7290543416800002 1.80379856528 0.07077719133186296
reactmsaview 512 1.81707073868 1.80379856528 0.07077719133186296
reactmsaview 512 1.9205281276800001 1.80379856528 0.07077719133186296
reactmsaview 8192 3.5411469166000002 3.5282914567 0.06763384330176377
reactmsaview 8192 3.5679646196 3.5282914567 0.06763384330176377
reactmsaview 8192 3.5510855906 3.5282914567 0.06763384330176377
reactmsaview 8192 3.5833639136 3.5282914567 0.06763384330176377
reactmsaview 8192 3.4427691946000003 3.5282914567 0.06763384330176377
reactmsaview 8192 3.5470157416 3.5282914567 0.06763384330176377
reactmsaview 8192 3.5362540346 3.5282914567 0.06763384330176377
reactmsaview 8192 3.4201123316 3.5282914567 0.06763384330176377
reactmsaview 8192 3.6354155006 3.5282914567 0.06763384330176377
reactmsaview 8192 3.4577867236 3.5282914567 0.06763384330176377
wasabi 1024 11.27291755662 10.67662867492 1.2722589433517129
wasabi 1024 11.22840611162 10.67662867492 1.2722589433517129
wasabi 1024 10.95081067962 10.67662867492 1.2722589433517129
wasabi 1024 11.83380600362 10.67662867492 1.2722589433517129
wasabi 1024 11.10353733062 10.67662867492 1.2722589433517129
wasabi 1024 10.72051738262 10.67662867492 1.2722589433517129
wasabi 1024 7.90043702162 10.67662867492 1.2722589433517129
wasabi 1024 8.91170619062 10.67662867492 1.2722589433517129
wasabi 1024 10.98860878262 10.67662867492 1.2722589433517129
wasabi 1024 11.85553968962 10.67662867492 1.2722589433517129
wasabi 128 6.08538434942 6.02916810062 0.34765130902423147
wasabi 128 6.60316934942 6.02916810062 0.34765130902423147
wasabi 128 5.63275438442 6.02916810062 0.34765130902423147
wasabi 128 6.23912145042 6.02916810062 0.34765130902423147
wasabi 128 6.40428149442 6.02916810062 0.34765130902423147
wasabi 128 5.63310151742 6.02916810062 0.34765130902423147
wasabi 128 5.9994427224199995 6.02916810062 0.34765130902423147
wasabi 128 5.59788370342 6.02916810062 0.34765130902423147
wasabi 128 5.86294362942 6.02916810062 0.34765130902423147
wasabi 128 6.2335984054199995 6.02916810062 0.34765130902423147
wasabi 2048 17.091240869019998 13.84885376412 2.783981361945018
wasabi 2048 12.44011851902 13.84885376412 2.783981361945018
wasabi 2048 17.66419971102 13.84885376412 2.783981361945018
wasabi 2048 11.54125481002 13.84885376412 2.783981361945018
wasabi 2048 10.78816621802 13.84885376412 2.783981361945018
wasabi 2048 17.26132841902 13.84885376412 2.783981361945018
wasabi 2048 14.70290433702 13.84885376412 2.783981361945018
wasabi 2048 14.398209747020001 13.84885376412 2.783981361945018
wasabi 2048 10.21799810502 13.84885376412 2.783981361945018
wasabi 2048 12.38311690602 13.84885376412 2.783981361945018
wasabi 256 5.95573082674 6.12840493064 0.487301341170067
wasabi 256 6.2150947827400005 6.12840493064 0.487301341170067
wasabi 256 5.85998751674 6.12840493064 0.487301341170067
wasabi 256 6.18027434974 6.12840493064 0.487301341170067
wasabi 256 5.94156142974 6.12840493064 0.487301341170067
wasabi 256 6.39153868874 6.12840493064 0.487301341170067
wasabi 256 7.17656342174 6.12840493064 0.487301341170067
wasabi 256 6.21690719374 6.12840493064 0.487301341170067
wasabi 256 6.12043354274 6.12840493064 0.487301341170067
wasabi 256 5.22595755374 6.12840493064 0.487301341170067
wasabi 4096 21.86277479008 26.688770920979998 6.807545774731806
wasabi 4096 32.65156762608 26.688770920979998 6.807545774731806
wasabi 4096 39.79261489108 26.688770920979998 6.807545774731806
wasabi 4096 25.34742422708 26.688770920979998 6.807545774731806
wasabi 4096 19.08983278108 26.688770920979998 6.807545774731806
wasabi 4096 22.69751761108 26.688770920979998 6.807545774731806
wasabi 4096 21.25687006008 26.688770920979998 6.807545774731806
wasabi 4096 32.80461572808 26.688770920979998 6.807545774731806
wasabi 4096 30.28353102408 26.688770920979998 6.807545774731806
wasabi 4096 21.10096047108 26.688770920979998 6.807545774731806
wasabi 512 8.030197034199999 8.212339102700001 0.4061658101552102
wasabi 512 7.7654974332 8.212339102700001 0.4061658101552102
wasabi 512 8.758115883199999 8.212339102700001 0.4061658101552102
wasabi 512 7.9505531072 8.212339102700001 0.4061658101552102
wasabi 512 7.9538075152 8.212339102700001 0.4061658101552102
wasabi 512 7.6675987022 8.212339102700001 0.4061658101552102
wasabi 512 8.268736131199999 8.212339102700001 0.4061658101552102
wasabi 512 8.8466749582 8.212339102700001 0.4061658101552102
wasabi 512 8.3646934302 8.212339102700001 0.4061658101552102
wasabi 512 8.5175168322 8.212339102700001 0.4061658101552102
wasabi 8192 47.4435511805 49.780246152500006 19.809675632947812
wasabi 8192 57.405109055500006 49.780246152500006 19.809675632947812
wasabi 8192 69.2261580275 49.780246152500006 19.809675632947812
wasabi 8192 69.45676085550001 49.780246152500006 19.809675632947812
wasabi 8192 30.2963086325 49.780246152500006 19.809675632947812
wasabi 8192 33.917864561500004 49.780246152500006 19.809675632947812
wasabi 8192 54.729556573500005 49.780246152500006 19.809675632947812
wasabi 8192 18.0623860885 49.780246152500006 19.809675632947812
wasabi 8192 79.6612192625 49.780246152500006 19.809675632947812
wasabi 8192 37.6035472875 49.780246152500006 19.809675632947812
Raw
plot.R
library(ggplot2)
library(scales)
df <- read.table("out.tsv", header = TRUE)
df$size <- df$size * df$size
x <- ggplot(df, aes(x = size, y = time, color = program)) +
geom_line(stat = "summary") +
geom_errorbar(width = 0.2, stat = "summary") +
geom_jitter(size = 0.5, position = position_jitter(width = 0.1, seed = 42)) +
scale_x_continuous(labels = comma, breaks = scales::pretty_breaks(n = 10)) +
ylab("time (s)") +
xlab("MSA size (total number of characters, C)") +
ggtitle("Time to render MSA")
ggsave("img/1.png", x, width = 7, height = 4)
@cmdcolin
Copy link
Author

cmdcolin commented Mar 9, 2025

current figure is here

1

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment