hugo_pipeline

trigger:
- main

pool:
  vmImage: 'ubuntu-18.04'

variables:
  imageName: 'fmc/hugo'
  containerRegistryConnection: 'BLASTREGISTRY' #Setup a new container connection in ADO with this name
  containerRegistryName: 'blastregistry'
  azureSubscription: 'FMCBLAST'
  tag: '$(Build.BuildId)'

steps:
- task: AzureCLI@2
  displayName: 'runtime_vars'
  name: runtime_vars
  inputs:
    azureSubscription: $(azureSubscription)
    scriptType: bash
    scriptLocation: inlineScript
    inlineScript: |
      az --version
      az account show
      SA_ACCESS_KEY=$(az storage account keys list --account-name $(DATA_STORAGE_ACCOUNT) | jq -r ".[0].value")
      echo "##vso[task.setvariable variable=SA_TOKEN]$SA_ACCESS_KEY"
      SKU=$(az acr show -n $(containerRegistryName) --query sku.name -o tsv)
      if [ "$SKU" == "Premium" ]; then
        echo "premium SKU"
        echo "##vso[task.setvariable variable=SKU]$SKU"
      else
        echo "non-premium SKU"
        echo "##vso[task.setvariable variable=SKU]$SKU"
      fi

- script: |
    wget https://packages.microsoft.com/config/ubuntu/18.04/packages-microsoft-prod.deb
    sudo dpkg -i packages-microsoft-prod.deb
    sudo apt-get update
    sudo apt-get install blobfuse tree
    WHOAMI=$(whoami)
    sudo mkdir /mnt/ramdisk
    sudo mount -t tmpfs -o size=16g tmpfs /mnt/ramdisk
    sudo mkdir -p /mnt/ramdisk/blobfusetmp
    sudo chown $WHOAMI /mnt/ramdisk/blobfusetmp
    export AZURE_STORAGE_ACCOUNT=$(DATA_STORAGE_ACCOUNT)
    export AZURE_STORAGE_ACCESS_KEY="$(SA_TOKEN)"
    mkdir biodata
    sudo -E blobfuse biodata --container-name=data --tmp-path=/mnt/ramdisk/blobfusetmp -o allow_other -o attr_timeout=240 -o entry_timeout=240 -o negative_timeout=120 --log-level=LOG_DEBUG
    sleep 10
    pwd
    ls -la
    tree biodata
  displayName: 'Run a multi-line script'

- script: |
    BASE_ADDRESS=$(WEB_ADDRESS)
    ls -la $(pwd)/biodata/data
    scripts/parse_biodata.sh -w $BASE_ADDRESS -d $(pwd)/biodata -o content -y
    ls -la content
  displayName: 'Parse raw data results'

- script: |
    docker run --rm -v $(pwd):/src klakegg/hugo:latest
    ls -la docs
  displayName: 'Run Website Generator'

- task: AzureCLI@2
  displayName: 'Add agent IP to firewall whitelist'
  condition: and(succeeded(), eq(variables['SKU'], 'Premium'))
  inputs:
    azureSubscription: $(azureSubscription)
    scriptType: 'bash'
    scriptLocation: 'inlineScript'
    inlineScript: |
      AGENT_IP="$(dig +short myip.opendns.com @resolver1.opendns.com)"
      if [ -z "$(az acr network-rule list --name $(containerRegistryName) | grep ${AGENT_IP})"]
      then 
        echo "Adding agent IP '${AGENT_IP}' to Azure Container Registry '$(containerRegistryName)' firewall whitelist"
        az acr network-rule add --name $(containerRegistryName) --ip-address $AGENT_IP
      else
        echo "Agent is already whitelisted; skipping."
      fi

- task: Docker@2
  displayName: Build and push an image to container registry
  inputs:
    command: buildAndPush
    repository: $(imageName)
    dockerfile: '**/Dockerfile' 
    containerRegistry: $(containerRegistryConnection)
    tags: |
      $(tag)
      latest

- task: AzureCLI@2
  displayName: 'Remove agent IP from firewall whitelist'
  condition: and(succeeded(), eq(variables['SKU'], 'Premium'))
  inputs:
    azureSubscription: $(azureSubscription)
    scriptType: 'bash'
    scriptLocation: 'inlineScript'
    inlineScript: |
      AGENT_IP="$(dig +short myip.opendns.com @resolver1.opendns.com)"
      echo "Removing agent IP '${AGENT_IP}' from Azure Container Registry '$(containerRegistryName)' firewall whitelist"
      az acr network-rule remove --name $(containerRegistryName) --ip-address $AGENT_IP --only-show-errors --output none