aziele

# This module is for handling BLAST output lists (in -outfmt 6/ -m8 format).

from itertools import groupby

class Hsp:
    """Store information about single HSP in an alignment hit. 

    Members: 
    qid       Query Id
    sid       Subject Id

aziele

#This software is a free software. Thus, it is licensed under GNU General Public License.
#Python implementation to Smith-Waterman Algorithm for Homework 1 of Bioinformatics class.
#Forrest Bao, Sept. 26 <http://fsbao.net> <forrest.bao aT gmail.com>

# zeros() was origianlly from NumPy.
# This version is implemented by alevchuk 2011-04-10
def zeros(shape):
    retval = []
    for x in range(shape[0]):
        retval.append([])