andrewgiessel

on open dropped_dir
  tell application "Terminal"
		set dirname to do shell script "perl -e \"print quotemeta ('" & POSIX path of item 1 of dropped_dir & "');\""
		do script "cd " & dirname & "; ipython notebook --pylab; exit"
	end tell
end open

andrewgiessel

# Load the BSgenome package and download the hg19 reference sequence 
# For documentation see http://www.bioconductor.org/packages/release/bioc/html/BSgenome.html
source("http://www.bioconductor.org/biocLite.R")
biocLite("BSgenome")
biocLite("BSgenome.Hsapiens.UCSC.hg19") #installs the human genome (~850 MB download).

library('BSgenome.Hsapiens.UCSC.hg19')

# Function to pull flanking sequence. Defaults to +/- 10 bp
getflank <- function(position, alleles="[N/N]", chr="chr12", offset=10) {

andrewgiessel

PREFIX=$HOME
VERSION=1.2.3

# Install Protocol Buffers
wget http://protobuf.googlecode.com/files/protobuf-2.4.1.tar.bz2
tar -xf protobuf-2.4.1.tar.bz2 
cd protobuf-2.4.1
./configure --prefix=$PREFIX
make
make install

andrewgiessel

#!/usr/bin/env ruby

## disconnect

# ./disconnect.rb -u yourusername [-o /your/path] [-p yourhttpproxyserver]
#
# This is a command-line utility for the bulk-downloading of run data from
# the connect.garmin.com web application, which has lackluster export
# capabilities.
#

andrewgiessel

import requests, os, glob, json

you = 'giessel'
data = 'tweets'

try: os.mkdir(data)
except Exception: pass

def run(max_id = False):
    already = glob.glob("%s/*.json" % data)

andrewgiessel

# Install Macports

# We'll install a relatively high-level package first, with a lot of dependencies,
# so that we pick up everything along the way

# Chaco is an enthought plotting package that'll 
sudo port install py26-chaco
sudo port select python python26

sudo port install py26-ipython