Alexandru Mahmoud almahmoud
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| # First go to the directory where you wish to have the mirror. | |
| # Eg: cd /my/mirror/path | |
| # For 3.12: | |
| # prep 3.12 directory and download list | |
| mkdir 3.12 && curl -O https://gist.githubusercontent.com/almahmoud/9d494607650613268dd2fc4c3fc7fb04/raw/2d54eb1fb461bf59b6235f83f416e34057abcaab/312ls | |
| # Copy all files from list |
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| 3275287 bioc/bin/macosx/contrib/4.0/ABAEnrichment_1.20.0.tgz | |
| 1319181 bioc/bin/macosx/contrib/4.0/ABSSeq_1.44.0.tgz | |
| 631277 bioc/bin/macosx/contrib/4.0/ABarray_1.58.0.tgz | |
| 856629 bioc/bin/macosx/contrib/4.0/ACE_1.8.0.tgz | |
| 10566553 bioc/bin/macosx/contrib/4.0/ACME_2.46.0.tgz | |
| 427708 bioc/bin/macosx/contrib/4.0/ADAM_1.6.0.tgz | |
| 1154076 bioc/bin/macosx/contrib/4.0/ADAMgui_1.6.0.tgz | |
| 2444739 bioc/bin/macosx/contrib/4.0/ADImpute_1.0.0.tgz | |
| 1208120 bioc/bin/macosx/contrib/4.0/ADaCGH2_2.30.0.tgz | |
| 618656 bioc/bin/macosx/contrib/4.0/AGDEX_1.38.0.tgz |
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| 3642572 bioc/bin/macosx/contrib/4.1/ABAEnrichment_1.24.0.tgz | |
| 1318814 bioc/bin/macosx/contrib/4.1/ABSSeq_1.48.0.tgz | |
| 632182 bioc/bin/macosx/contrib/4.1/ABarray_1.62.0.tgz | |
| 2578282 bioc/bin/macosx/contrib/4.1/ACE_1.12.0.tgz | |
| 10566791 bioc/bin/macosx/contrib/4.1/ACME_2.50.0.tgz | |
| 406756 bioc/bin/macosx/contrib/4.1/ADAM_1.10.0.tgz | |
| 942717 bioc/bin/macosx/contrib/4.1/ADAMgui_1.10.0.tgz | |
| 2444002 bioc/bin/macosx/contrib/4.1/ADImpute_1.4.0.tgz | |
| 1215905 bioc/bin/macosx/contrib/4.1/ADaCGH2_2.34.0.tgz | |
| 618457 bioc/bin/macosx/contrib/4.1/AGDEX_1.42.0.tgz |
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| IN PSQL OPERATOR | |
| time="2021-04-19T23:37:27Z" level=info msg="SYNC event has been queued" cluster-name=try30/galaxy-try30-gxy-rls-galaxy-postgres pkg=controller worker=1 | |
| time="2021-04-19T23:37:27Z" level=info msg="there are 1 clusters running" pkg=controller | |
| time="2021-04-19T23:37:27Z" level=info msg="syncing of the cluster started" cluster-name=try30/galaxy-try30-gxy-rls-galaxy-postgres pkg=controller worker=1 | |
| time="2021-04-19T23:37:27Z" level=debug msg="team API is disabled" cluster-name=try30/galaxy-try30-gxy-rls-galaxy-postgres pkg=cluster worker=1 | |
| time="2021-04-19T23:37:27Z" level=info msg="syncing secrets" cluster-name=try30/galaxy-try30-gxy-rls-galaxy-postgres pkg=cluster worker=1 | |
| time="2021-04-19T23:37:27Z" level=debug msg="secret try30/galaxydbuser.galaxy-try30-gxy-rls-galaxy-postgres.credentials.postgresql.acid.zalan.do already exists, fetching its password" cluster-name=try30/galaxy-try30-gxy-rls-galaxy-postgres pkg=cluster worker=1 | |
| time="2021-04-19T23:37:27Z" level=debug msg="secret try30/standby |
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| (Background on this error at: http://sqlalche.me/e/13/e3q8) | |
| galaxy.workflow.scheduling_manager ERROR 2021-04-19 22:00:19,000 [pN:job_handler_0,p:7,tN:WorkflowRequestMonitor.monitor_thread] An exception occured scheduling while scheduling workflows | |
| Traceback (most recent call last): | |
| File "/galaxy/server/.venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1276, in _execute_context | |
| self.dialect.do_execute( | |
| File "/galaxy/server/.venv/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 608, in do_execute | |
| cursor.execute(statement, parameters) | |
| psycopg2.errors.ReadOnlySqlTransaction: cannot execute UPDATE in a read-only transaction | |
| The above exception was the direct cause of the following exception: |
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| <?xml version="1.0" encoding="UTF-8"?> | |
| <toolbox tool_path="/cvmfs/cloud.galaxyproject.org/tools" tool_cache_data_dir="/cvmfs/cloud.galaxyproject.org/var/tool_cache"> | |
| <section id="virology" name="Virology" version=""> | |
| <tool file="toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/db536ad45f28/ivar_trim/ivar_trim.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.2.2+galaxy1"> | |
| <tool_shed>toolshed.g2.bx.psu.edu</tool_shed> | |
| <repository_name>ivar_trim</repository_name> | |
| <repository_owner>iuc</repository_owner> | |
| <installed_changeset_revision>db536ad45f28</installed_changeset_revision> | |
| <id>toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.2.2+galaxy1</id> | |
| <version>1.2.2+galaxy1</version> |
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| apiVersion: v1 | |
| kind: PersistentVolume | |
| metadata: | |
| annotations: | |
| pv.kubernetes.io/provisioned-by: rancher.io/local-path | |
| finalizers: | |
| - kubernetes.io/pv-protection | |
| managedFields: | |
| - apiVersion: v1 | |
| fieldsType: FieldsV1 |
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| DEBUG:galaxy.app:python path is: /galaxy/server/scripts, /galaxy/server/lib, /usr/lib/python38.zip, /usr/lib/python3.8, /usr/lib/python3.8/lib-dynload, /galaxy/server/.venv/lib/python3.8/site-packages | |
| DEBUG:galaxy.config:Configuration directory is /galaxy/server/config | |
| DEBUG:galaxy.config:Data directory is /galaxy/server/database | |
| DEBUG:galaxy.config:Managed config directory is /galaxy/server/config | |
| DEBUG:galaxy.containers:config file '/galaxy/server/config/containers_conf.yml' does not exist, running with default config | |
| WARNING:galaxy.config:Config option 'sanitize_whitelist_file' is deprecated and will be removed in a future release. Please consult the latest version of the sample configuration file. | |
| galaxy.web_stack DEBUG 2021-03-24 01:41:24,164 [pN:job_handler_0,p:7,tN:MainThread] WeblessApplicationStack initialized | |
| galaxy.web_stack DEBUG 2021-03-24 01:41:24,164 [pN:job_handler_0,p:7,tN:MainThread] Will attach to pool(s): job-handlers | |
| galaxy.web_stack DEBUG 2021-03-24 01:41:24,165 [pN:job_handler_0,p:7,tN |
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| root@nvidia-driver-daemonset-4wzdb:/usr/src/nvidia-450.80.02# cat /var/log/nvidia-installer.log | |
| nvidia-installer log file '/var/log/nvidia-installer.log' | |
| creation time: Thu Mar 11 08:12:43 2021 | |
| installer version: 450.80.02 | |
| PATH: /usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin | |
| nvidia-installer command line: | |
| nvidia-installer | |
| --kernel-module-only |
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| DEBUG:galaxy.app:python path is: /galaxy/server/scripts, /galaxy/server/lib, /usr/lib/python38.zip, /usr/lib/python3.8, /usr/lib/python3.8/lib-dynload, /galaxy/server/.venv/lib/python3.8/site-packages | |
| DEBUG:galaxy.config:Configuration directory is /galaxy/server/config | |
| DEBUG:galaxy.config:Data directory is /galaxy/server/database | |
| DEBUG:galaxy.config:Managed config directory is /galaxy/server/config | |
| DEBUG:galaxy.containers:config file '/galaxy/server/config/containers_conf.yml' does not exist, running with default config | |
| WARNING:galaxy.config:Config option 'sanitize_whitelist_file' is deprecated and will be removed in a future release. Please consult the latest version of the sample configuration file. | |
| galaxy.web_stack DEBUG 2021-03-08 22:58:43,101 WeblessApplicationStack initialized | |
| galaxy.web_stack DEBUG 2021-03-08 22:58:43,101 Will attach to pool(s): job-handlers | |
| galaxy.web_stack DEBUG 2021-03-08 22:58:43,103 server_name set to: job_handler_0 | |
| galaxy.queue_worker INFO 2021-03-08 22:58:43,104 Initializing jo |
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