Skip to content

Instantly share code, notes, and snippets.

@NelleV

NelleV/R - named matrix with gene_id and go_terms to list mapping gene_id to GO_term

Created March 1, 2019 23:43
Show Gist options
  • Save NelleV/7f600eddb1e8af0ed96707cef223844b to your computer and use it in GitHub Desktop.
Save NelleV/7f600eddb1e8af0ed96707cef223844b to your computer and use it in GitHub Desktop.
Download ZIP
Raw
R - named matrix with gene_id and go_terms to list mapping gene_id to GO_term
genes = structure(list(go_id = c("GO:0016787", "GO:0005634", "GO:0016798",
"GO:0008152", "GO:0005737", "GO:0004553", "GO:0005975", "GO:1903561",
"GO:0015929", "GO:0004563", "GO:0102148", "GO:0001934", "GO:0004672",
"GO:0005524", "GO:0006468", "GO:0016020", "GO:0016021", "GO:0016740",
"GO:0005886", "GO:0005634"), refseq_mrna = c("NM_001001333",
"NM_001001333", "NM_001001333", "NM_001001333", "NM_001001333",
"NM_001001333", "NM_001001333", "NM_001001333", "NM_001001333",
"NM_001001333", "NM_001001333", "NM_001003817", "NM_001003817",
"NM_001003817", "NM_001003817", "NM_001003817", "NM_001003817",
"NM_001003817", "NM_001003817", "NM_001003817")), row.names = c(NA,
20L), class = "data.frame")
# To the following output:
genes_mapping_to_go = list(NM_001001333 = c("GO:0016787", "GO:0005634", "GO:0016798",
"GO:0008152", "GO:0005737", "GO:0004553", "GO:0005975", "GO:1903561",
"GO:0015929", "GO:0004563", "GO:0102148"), NM_001003817 = c("GO:0001934",
"GO:0004672", "GO:0005524", "GO:0006468", "GO:0016020", "GO:0016021",
"GO:0016740", "GO:0005886", "GO:0005634"))
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment