get_old_packages.R

#' Install old packages in new version of R
#'
#' @param old_path Input the libPath of the old R version. Leave blank to detect
#'   automatically.
#'
#' @return
#' @export
#'
#' @examples
#' get_old_packages()
get_old_packages <- function(old_path = NULL) {
  
  if (is.null(old_path)) old_path <- setdiff(list.dirs(dirname(.libPaths()[1]), recursive = FALSE), .libPaths()[1])
  
  if (length(old_path) > 1) {
    sel <- menu(old_path, title = "which one looks like the library path of the previous R version?")
    old_path <- old_path[sel]
  }
  
  old_packages <- installed.packages(lib.loc = old_path)
  new_packages <- installed.packages()
  
  
  missing_df <- as.data.frame(old_packages[
    !old_packages[, "Package"] %in% new_packages[, "Package"], 
  ])
  
  if (!requireNamespace("pak", quietly = TRUE)) install.packages("pak")
  
  # install from CRAN
  on_cran <- tools::CRAN_package_db()
  missing_from_cran <- intersect(missing_df$Package, on_cran$Package)
  if (length(missing_from_cran) > 0) {
    pak::pak(missing_from_cran)
  }
  
  # install others
  missing_df <- as.data.frame(old_packages[
    !old_packages[, 1] %in% installed.packages()[, 1], 
  ])
  
  on_gh <- function(pkg) {
    repo = jsonlite::fromJSON(paste0("http://rpkg-api.gepuro.net/rpkg?q=", pkg))
    message("-> Looking up ", pkg)
    if (length(repo) > 0) {
      repo[basename(repo$pkg_name) == pkg, ]
    }
  }
  
  gh_packages <- do.call("rbind", lapply(missing_df$Package, on_gh))
  sel <- 99
  while (sel > 0) {
    sel <- menu(c("view", "just install", "just return data.frame"), 
                title = "Do you want to View() GitHub packages before installation?")
    
    switch(sel, 
           View(gh_packages), 
           {sel <- 0; pak::pak(gh_packages$pkg_name)},
           {sel <- 0; return(gh_packages)})
    
  }
  
}

Use with:

source("https://gist.githubusercontent.com/JBGruber/28c79af6d5f9015370feef31da2cb1da/raw/get_old_packages.R")
get_old_packages()