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Axect/install_galprop.sh

Created March 5, 2024 00:33
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Modified Galprop install script (on Arch linux - boost, clhep required)
Raw
install_galprop.sh
#!/usr/bin/env bash
# Below are 2 example settings to build for OSX (10.15) or Linux (CentOS 8). Uncomment/modify the variables appropriate for your system -- you need to set these system variables
# User-defined variables -- this example is for OSX using a macports installation for the various tools
#MY_CMAKE=/opt/local/bin/cmake
#MY_AUTOCONF=/opt/local/bin/autoconf
#MY_CC=/opt/local/bin/clang-mp-12
#MY_CXX=/opt/local/bin/clang++-mp-12
#MY_FC=/opt/local/bin/gfortran-mp-11
# User-defined variables -- this example is for CentOS 7 using devtoolset-10 system tools
MY_CMAKE=cmake
MY_AUTOCONF=autoconf
MY_CC=/usr/bin/gcc
MY_CXX=/usr/bin/g++
MY_FC=/usr/bin/gfortran
# Set this to > 1 to use multiple threads during the build process
MY_BUILD_THREAD_NUMBER=8
###----- Alter below if further system customisation is needed -----###
# Additional compiler options. The `-march=native' flag is for gcc. Needs to be commented (or altered) for clang.
MY_CXX_FLAGS="-march=native"
MY_FC_FLAGS="-march=native"
# Install directory
INSTALL_DIRECTORY=$(pwd)
# System type variables
case "$OSTYPE" in
darwin*)
MY_OS_BOOST_TOOLSET=clang
MY_OS_SHAREDLIB_SUFFIX=dylib
MY_OS_SHAREDLIB_PATH_VAR=DYLD_LIBRARY_PATH
MY_RC_FILE=.bash_profile
;;
linux*)
MY_OS_BOOST_TOOLSET=gcc
MY_OS_SHAREDLIB_SUFFIX=so
MY_OS_SHAREDLIB_PATH_VAR=LD_LIBRARY_PATH
MY_RC_FILE=.zshrc
;;
*) echo "unknown: $OSTYPE"
exit
;;
esac
# Define colours
RED="\033[0;31m"
GREEN="\033[0;32m"
PC="\033[0;35m"
TC="\033[0;36m"
NC="\033[0m"
# Configuration/build/install logging. Can change to /dev/null for silent.
LOG_DIRECTORY=${INSTALL_DIRECTORY}/log
function command_exists() {
type "$1" &>/dev/null
}
function delete_build() {
for DIRS in "lib/cfitsio-4.0.0" "lib/build/cfitsio-4.0.0" "lib/CCfits-2.6" "lib/build/CCfits-2.6" "lib/Healpix_3.50" "lib/build/Healpix_3.50" "lib/build/wcslib-7.7" "lib/wcslib-7.7" "lib/build/xerces-c-3.2.3" "lib/xerces-c-3.2.3" "lib/gsl-2.7" "lib/build/gsl-2.7" "lib/build/galtoolslib-1.1.1006" "lib/galtoolslib-1.1.1006-Source" "lib/build/eigen-3.4.0" "lib/eigen-3.4.0" "lib/build/CLHEP-2.4.4.2" "lib/2.4.4.2" "lib/build/boost_1_76_0" "lib/boost_1_76_0" "lib/build/Minuit2" "lib/build" "build" "GALPROP-57.0.3032"; do
rm -rf ${DIRS}
done
}
function clean_up() {
for DIRS in "lib/cfitsio-4.0.0" "lib/CCfits-2.6" "lib/Healpix_3.50" "lib/wcslib-7.7" "lib/xerces-c-3.2.3" "lib/gsl-2.7" "lib/galtoolslib-1.1.1006-Source" "lib/eigen-3.4.0" "lib/2.4.4.2" "lib/boost_1_76_0" "lib/Minuit2"; do
rm -rf ${DIRS}
done
}
function initial_check() {
if ! command_exists ${MY_CC}; then
echo -e "--- ${RED}Error:${NC} C compiler not found. Please install C compiler!"
exit
fi
if ! command_exists ${MY_CXX}; then
echo -e "--- ${RED}Error:${NC} C++ compiler not found. Please install C++ compiler!"
exit
fi
if ! command_exists ${MY_FC}; then
echo -e "--- ${RED}Error:${NC} Fortran compiler not found. Please install Fortran compiler!"
exit
fi
if ! command_exists ${MY_CMAKE}; then
echo -e "--- ${RED}Error:${NC} cmake not found. Please install cmake!"
exit
fi
if ! command_exists ${MY_AUTOCONF}; then
echo -e "--- ${RED}Error:${NC} autoconf not found. Please install autotools!"
exit
fi
if [ ! -d "lib" ]; then
echo -e "--- ${RED}Error:${NC} support library directory not found (incomplete GALPROP package?)"
exit
fi
if [ ! -d "source" ]; then
echo -e "--- ${RED}Error:${NC} source directory not found (incomplete GALPROP package?)"
exit
fi
}
function install_support_libraries() {
if ! command_exists ${MY_CC}; then
echo -e "--- ${RED}Error:${NC} C compiler not found. Please install C compiler!"
exit
fi
if ! command_exists ${MY_CXX}; then
echo -e "--- ${RED}Error:${NC} C++ compiler not found. Please install C++ compiler!"
exit
fi
if ! command_exists ${MY_FC}; then
echo -e "--- ${RED}Error:${NC} Fortran compiler not found. Please install Fortran compiler!"
exit
fi
# Check for necessary programs 1
if ! command_exists ${MY_CMAKE}; then
echo -e "--- ${RED}Error:${NC} cmake not found."
exit
fi
# Check for necessary programs 2
if ! command_exists ${MY_AUTOCONF}; then
echo -e "--- ${RED}Error:${NC} autoconf not found."
exit
fi
echo -e "${PC}--- Install required libraries ---${NC}"
if [ ! -d "lib" ]; then
echo -e "--- ${RED}Error:${NC} lib directory not found (incomplete package?)"
exit
fi
cd "lib"
echo -e "Install cfitsio"
if [ ! -f "cfitsio-4.0.0/build/CMakeCache.txt" ] && [ -d "cfitsio-4.0.0/" ]; then
rm -r "cfitsio-4.0.0/"
fi
if [ ! -d "cfitsio-4.0.0" ]; then
tar -xf cfitsio-4.0.0.tar.gz
fi
cd "cfitsio-4.0.0"
echo -ne "- Configure cfitsio ... "\\r
if [ ! -d "build" ]; then
mkdir "build"
fi
cd "build"
${MY_CMAKE} .. -DCMAKE_INSTALL_PREFIX=${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0 -DCMAKE_C_COMPILER=${MY_CC} -DUSE_CURL=OFF -DCMAKE_BUILD_TYPE=$2 -DBUILD_SHARED_LIBS=$1 >${LOG_DIRECTORY}/cfitsio-4.0.0-config-log 2>&1 &&
echo -e "- Configure cfitsio [${GREEN}done${NC}]" ||
{
echo -e "- Configure cfitsio [${RED}Error${NC}]"
exit
}
echo -ne "- Compile cfitsio ... "\\r
make VERBOSE=1 -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/cfitsio-4.0.0-build-log 2>&1 &&
echo -e "- Compile cfitsio [${GREEN}done${NC}]" ||
{
echo -e "- Compile cfitsio [${RED}Error${NC}]"
exit
}
make install >${LOG_DIRECTORY}/cfitsio-4.0.0-install-log 2>&1 &&
echo -e "- Local install of cfitsio [${GREEN}done${NC}]" ||
{
echo -e "- Local install cfitsio [${RED}Error${NC}]"
exit
}
cd ${INSTALL_DIRECTORY}/lib
echo -e "Install wcslib"
if [ ! -d "wcslib-7.7" ]; then
tar -xf wcslib-7.7.tar.bz2
fi
cd "wcslib-7.7"
echo -ne "- Configure wcslib ... "\\r
./configure CC=${MY_CC} F77=${MY_FC} --prefix=${INSTALL_DIRECTORY}/lib/build/wcslib-7.7 CFLAGS="-fPIC -g -O2" --disable-flex --with-cfitsiolib=${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/lib --with-cfitsioinc=${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/include >${LOG_DIRECTORY}/wcslib-7.7-config-log 2>&1 &&
echo -e "- Configure wcslib [${GREEN}done${NC}]" ||
{
echo -e "- Configure wcslib [${RED}Error${NC}]"
exit
}
echo -ne "- Compile wcslib ... "\\r
make -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/wcslib-7.7-build-log 2>&1 &&
echo -e "- Compile wcslib [${GREEN}done${NC}]" ||
{
echo -e "- Compile wcslib [${RED}Error${NC}]"
exit
}
make install >${LOG_DIRECTORY}/wcslib-7.7-install-log 2>&1 &&
echo -e "- Local install of wcslib [${GREEN}done${NC}]" ||
{
echo -e "- Local install wcslib [${RED}Error${NC}]"
exit
}
cd ${INSTALL_DIRECTORY}/lib
echo -e "Install CCfits"
if [ ! -f "CCfits-2.6/build/CMakeCache.txt" ] && [ -d "CCfits-2.6/" ]; then
rm -r "CCfits-2.6/"
fi
if [ ! -d "CCfits-2.6" ]; then
tar -xf CCfits-2.6.tar.gz
fi
cd "CCfits-2.6"
echo -ne "- Configure CCfits ... "\\r
if [ ! -d "build" ]; then
mkdir "build"
fi
cd "build"
${MY_CMAKE} .. -DCMAKE_INSTALL_PREFIX=${INSTALL_DIRECTORY}/lib/build/CCfits-2.6 -DCMAKE_CXX_COMPILER=${MY_CXX} -DCMAKE_BUILD_TYPE=$2 -DBUILD_SHARED_LIBS=$1 -DCMAKE_PREFIX_PATH="${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0" >${LOG_DIRECTORY}/CCfits-2.6-config-log 2>&1 &&
echo -e "- Configure CCfits [${GREEN}done${NC}]" ||
{
echo -e "- Configure CCfits [${RED}Error${NC}]"
exit
}
echo -ne "- Compile CCfits ... "\\r
make -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/CCfits-2.6-build-log 2>&1 &&
echo -e "- Compile CCfits [${GREEN}done${NC}]" ||
{
echo -e "- Compile CCfits [${RED}Error${NC}]"
exit
}
make install >${LOG_DIRECTORY}/CCfits-2.6-install-log 2>&1 &&
echo -e "- Local install of CCfits [${GREEN}done${NC}]" ||
{
echo -e "- Local install CCfits [${RED}Error${NC}]"
exit
}
cd ${INSTALL_DIRECTORY}/lib
echo -e "Install Healpix"
if [ ! -d "Healpix_3.50" ]; then
tar -xf Healpix_3.50.tar.gz
fi
cd "Healpix_3.50"
echo -ne "- Configure Healpix ... "\\r
cd "src/cxx"
${MY_AUTOCONF} &> /dev/null 2>&1
./configure CC=${MY_CC} CXX=${MY_CXX} --with-libcfitsio-lib=${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/lib CPPFLAGS="-fPIC" --with-libcfitsio-include=${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/include >${LOG_DIRECTORY}/Healpix_3.50-config-log 2>&1 &&
echo -e "- Configure Healpix [${GREEN}done${NC}]" ||
{
echo -e "- Configure Healpix [${RED}Error${NC}]"
exit
}
echo -ne "- Compile Healpix ... "\\r
make -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/Healpix_3.50-build-log 2>&1 &&
echo -e "- Compile Healpix [${GREEN}done${NC}]" ||
{
echo -e "- Compile Healpix [${RED}Error${NC}]"
exit
}
cd ${INSTALL_DIRECTORY}/lib/build
if [ ! -d "Healpix_3.50" ]; then
mkdir Healpix_3.50
fi
cd Healpix_3.50
if [ -d "auto" ]; then
rm -r auto
fi
cd ${INSTALL_DIRECTORY}/lib/Healpix_3.50/src/cxx
mv auto ${INSTALL_DIRECTORY}/lib/build/Healpix_3.50/
echo -e "- Local install of Healpix [${GREEN}done${NC}]" ||
{
echo -e "- Local install Healpix [${RED}Error${NC}]"
exit
}
cd ${INSTALL_DIRECTORY}/lib
echo -e "Install xerces-c"
if [ ! -f "xerces-c-3.2.3/build/CMakeCache.txt" ] && [ -d "xerces-c-3.2.3/" ]; then
rm -r "xerces-c-3.2.3/"
fi
if [ ! -d "xerces-c-3.2.3" ]; then
tar -xf xerces-c-3.2.3.tar.bz2
fi
cd "xerces-c-3.2.3"
echo -ne "- Configure xerces-c ... "\\r
if [ ! -d "build" ]; then
mkdir "build"
fi
cd "build"
${MY_CMAKE} .. -G "Unix Makefiles" -DCMAKE_INSTALL_PREFIX=${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3 -DCMAKE_C_COMPILER=${MY_CC} -DCMAKE_CXX_COMPILER=${MY_CXX} -DBUILD_SHARED_LIBS=$1 -DCMAKE_BUILD_TYPE=$2 >${LOG_DIRECTORY}/xerces-c-3.2.3-config-log 2>&1 &&
echo -e "- Configure xerces-c [${GREEN}done${NC}]" ||
{
echo -e "- Configure xerces-c [${RED}Error${NC}]"
exit
}
echo -ne "- Compile xerces-c ... "\\r
make -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/xerces-c-3.2.3-build-log 2>&1 &&
echo -e "- Compile xerces-c [${GREEN}done${NC}]" ||
{
echo -e "- Compile xerces-c [${RED}Error${NC}]"
exit
}
make install >${LOG_DIRECTORY}/xerces-c-3.2.3-install-log 2>&1 &&
echo -e "- Local install of xerces-c [${GREEN}done${NC}]" ||
{
echo -e "- Local install xerces-c [${RED}Error${NC}]"
exit
}
cd ${INSTALL_DIRECTORY}/lib
echo -e "Install gsl"
if [ ! -d "gsl-2.7" ]; then
tar -xf gsl-2.7.tar.gz
fi
cd "gsl-2.7"
echo -ne "- Configure gsl ... "\\r
./configure CC=${MY_CC} FC=${MY_FC} --prefix=${INSTALL_DIRECTORY}/lib/build/gsl-2.7 >${LOG_DIRECTORY}/gsl-2.7-config-log 2>&1 &&
echo -e "- Configure gsl [${GREEN}done${NC}]" ||
{
echo -e "- Configure gsl [${RED}Error${NC}]"
exit
}
echo -ne "- Compile gsl ... "\\r
make -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/gsl-2.7-build-log 2>&1 &&
echo -e "- Compile gsl [${GREEN}done${NC}]" ||
{
echo -e "- Compile gsl [${RED}Error${NC}]"
exit
}
make install >${LOG_DIRECTORY}/gsl-2.7-install-log 2>&1 &&
echo -e "- Local install of gsl [${GREEN}done${NC}]" ||
{
echo -e "- Local install gsl [${RED}Error${NC}]"
exit
}
cd ${INSTALL_DIRECTORY}/lib
#echo -e "Install boost"
#if [ ! -d "boost_1_76_0" ]; then
# tar -xf boost_1_76_0.tar.bz2
#fi
#cd "boost_1_76_0"
#if [ ! -d "build" ]; then
# mkdir "build"
#fi
#echo -ne "- Configure boost ... "\\r
#cd "tools/build"
#./bootstrap.sh --cxx=${MY_CXX} -std=c++11 >${LOG_DIRECTORY}/boost_1_76_0-install-bootstrap-log 2>&1
#./b2 install --prefix=${INSTALL_DIRECTORY}/lib/boost_1_76_0/build >${LOG_DIRECTORY}/boost_1_76_0-config-log 2>&1
#cd ${INSTALL_DIRECTORY}/lib/boost_1_76_0
#echo -ne "- Compile and install boost ... "\\r
#build/bin/b2 install --prefix=${INSTALL_DIRECTORY}/lib/build/boost_1_76_0 --with-system --with-filesystem --with-serialization --with-math toolset=${MY_OS_BOOST_TOOLSET} variant=release runtime-link=shared threading=multi stage >${LOG_DIRECTORY}/boost_1_76_0-install-log 2>&1 &&
#echo -e "- Local install of boost [${GREEN}done${NC}]" ||
#{
# echo -e "- Local install boost [${RED}Error${NC}]"
# exit
#}
#cd ${INSTALL_DIRECTORY}/lib
#echo -e "Install CLHEP"
#if [ ! -f "2.4.4.2/build/CMakeCache.txt" ] && [ -d "2.4.4.2/" ]; then
# rm -r "2.4.4.2/"
#fi
#if [ ! -d "2.4.4.2" ]; then
# tar -xf clhep-2.4.4.2.tgz
#fi
#cd "2.4.4.2"
#echo -ne "- Configure CLHEP ... "\\r
#if [ ! -d "build" ]; then
# mkdir "build"
#fi
#cd "build"
#${MY_CMAKE} ../CLHEP -DCMAKE_INSTALL_PREFIX=${INSTALL_DIRECTORY}/lib/build/CLHEP-2.4.4.2 -DCMAKE_CXX_COMPILER=${MY_CXX} -DCMAKE_C_COMPILER=${MY_CC} -DBUILD_SHARED_LIBS=$1 -DCMAKE_BUILD_TYPE=$2 >${LOG_DIRECTORY}/CLHEP-2.4.4.2-config-log 2>&1 &&
#echo -e "- Configure CLHEP [${GREEN}done${NC}]" ||
#{
# echo -e "- Configure CLHEP [${RED}Error${NC}]"
# exit
#}
#echo -ne "- Compile CLHEP ... "\\r
#make -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/CLHEP-2.4.4.2-build-log 2>&1 &&
#echo -e "- Compile CLHEP [${GREEN}done${NC}]" ||
#{
# echo -e "- Compile CLHEP [${RED}Error${NC}]"
# exit
#}
#make install >${LOG_DIRECTORY}/CLHEP-2.4.4.2-install-log 2>&1 &&
#echo -e "- Local install of CLHEP [${GREEN}done${NC}]" ||
#{
# echo -e "- Local install CLHEP [${RED}Error${NC}]"
# exit
#}
#cd ${INSTALL_DIRECTORY}/lib
echo -e "Install galtoolslib"
if [ ! -f "galtoolslib-1.1.1006-Source/build/CMakeCache.txt" ] && [ -d "galtoolslib-1.1.1006-Source/" ]; then
rm -r "galtoolslib-1.1.1006-Source/"
fi
if [ ! -d "galtoolslib-1.1.1006-Source" ]; then
tar -xf galtoolslib-1.1.1006-Source.tar.gz
fi
cd "galtoolslib-1.1.1006-Source"
echo -ne "- Configure galtoolslib ... "\\r
if [ ! -d "build" ]; then
mkdir "build"
fi
cd "build"
# Xerces sets up different default build targets based on OS. Need to substitute correct path for the `lib' directory -- it can be `lib64' or `lib'
if [ -d "${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/lib64" ]; then
${MY_CMAKE} .. -DCMAKE_INSTALL_PREFIX=${INSTALL_DIRECTORY}/lib/build/galtoolslib-1.1.1006 -DCMAKE_CXX_COMPILER=${MY_CXX} -DCMAKE_C_COMPILER=${MY_CC} -DCMAKE_Fortran_COMPILER=${MY_FC} -DCMAKE_BUILD_TYPE=$2 -DBUILD_SHARED_LIBS=$1 -DCMAKE_PREFIX_PATH="/usr" -DCfitsio_INC=${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/include -DCfitsio_LIB=${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/lib/ -DCCfits_PREFIX=${INSTALL_DIRECTORY}/lib/build/CCfits-2.6 -DWCS_PREFIX=${INSTALL_DIRECTORY}/lib/build/wcslib-7.7 -DHEALPix_PREFIX=${INSTALL_DIRECTORY}/lib/build/Healpix_3.50/auto -DGSL_CONFIG=${INSTALL_DIRECTORY}/lib/build/gsl-2.7/bin/gsl-config -DXERCESC_INCLUDE=${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/include -DXERCESC_LIBRARY=${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/lib64/libxerces-c.${MY_OS_SHAREDLIB_SUFFIX} >${LOG_DIRECTORY}/galtoolslib-config-log 2>&1
else
${MY_CMAKE} .. -DCMAKE_INSTALL_PREFIX=${INSTALL_DIRECTORY}/lib/build/galtoolslib-1.1.1006 -DCMAKE_CXX_COMPILER=${MY_CXX} -DCMAKE_C_COMPILER=${MY_CC} -DCMAKE_Fortran_COMPILER=${MY_FC} -DCMAKE_BUILD_TYPE=$2 -DBUILD_SHARED_LIBS=$1 -DCMAKE_PREFIX_PATH="/usr" -DCfitsio_INC=${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/include -DCfitsio_LIB=${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/lib/ -DCCfits_PREFIX=${INSTALL_DIRECTORY}/lib/build/CCfits-2.6 -DWCS_PREFIX=${INSTALL_DIRECTORY}/lib/build/wcslib-7.7 -DHEALPix_PREFIX=${INSTALL_DIRECTORY}/lib/build/Healpix_3.50/auto -DGSL_CONFIG=${INSTALL_DIRECTORY}/lib/build/gsl-2.7/bin/gsl-config -DXERCESC_INCLUDE=${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/include -DXERCESC_LIBRARY=${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/lib/libxerces-c.${MY_OS_SHAREDLIB_SUFFIX} >${LOG_DIRECTORY}/galtoolslib-config-log 2>&1
fi &&
echo -e "- Configure galtoolslib [${GREEN}done${NC}]" ||
{
echo -e "- Configure galtoolslib [${RED}Error${NC}]"
exit
}
echo -ne "- Compile galtoolslib ... "\\r
make VERBOSE=1 -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/galtoolslib-build-log 2>&1 &&
echo -e "- Compile galtoolslib [${GREEN}done${NC}]" ||
{
echo -e "- Compile galtoolslib [${RED}Error${NC}]"
exit
}
make install >${LOG_DIRECTORY}/galtoolslib-install-log 2>&1 &&
echo -e "- Local install of galtoolslib [${GREEN}done${NC}]" ||
{
echo -e "- Local install galtoolslib [${RED}Error${NC}]"
exit
}
cd ${INSTALL_DIRECTORY}/lib
echo -e "Install eigen3"
if [ ! -f "eigen-3.4.0/build/CMakeCache.txt" ] && [ -d "eigen-3.4.0/" ]; then
rm -r "eigen-3.4.0/"
fi
if [ ! -d "eigen-3.4.0" ]; then
tar -xf eigen-3.4.0.tar.gz
fi
cd "eigen-3.4.0"
echo -ne "- Configure eigen3 ... "\\r
if [ ! -d "build" ]; then
mkdir "build"
fi
cd "build"
${MY_CMAKE} .. -DCMAKE_INSTALL_PREFIX=${INSTALL_DIRECTORY}/lib/build/eigen-3.4.0 -DCMAKE_C_COMPILER=${MY_CC} -DCMAKE_CXX_COMPILER=${MY_CXX} -DBUILD_SHARED_LIBS=$1 -DCMAKE_BUILD_TYPE=$2 -DCMAKE_CXX_FLAGS=${MY_CXX_FLAGS} -DBUILD_TESTING=OFF >${LOG_DIRECTORY}/eigen-3.4.0-config-log 2>&1 &&
echo -e "- Configure eigen3 [${GREEN}done${NC}]" ||
{
echo -e "- Configure eigen3 [${RED}Error${NC}]"
exit
}
make install >${LOG_DIRECTORY}/eigen-3.4.0-install-log 2>&1 &&
cd ${INSTALL_DIRECTORY}/lib/build/eigen-3.4.0/share/eigen3/cmake &&
if [ ! -e "EIGEN3Config.cmake" ]; then
ln -s Eigen3Config.cmake EIGEN3Config.cmake >${LOG_DIRECTORY}/eigen-3.4.0-linking-log 2>&1
fi &&
echo -e "- Local install of eigen3 [${GREEN}done${NC}]" ||
{
echo -e "- Local install eigen3 [${RED}Error${NC}]"
exit
}
cd ${INSTALL_DIRECTORY}/lib
echo -e "Install Minuit2 standalone"
if [ ! -f "Minuit2/build/CMakeCache.txt" ] && [ -d "Minuit2/" ]; then
rm -r "Minuit2/"
fi
if [ ! -d "Minuit2" ]; then
tar -xf Minuit2.tar.gz
fi
cd "Minuit2"
echo -ne "- Configure Minuit2 standalone ... "\\r
if [ ! -d "build" ]; then
mkdir "build"
fi
cd "build"
${MY_CMAKE} .. -DCMAKE_INSTALL_PREFIX=${INSTALL_DIRECTORY}/lib/build/Minuit2 -DCMAKE_C_COMPILER=${MY_CC} -DCMAKE_CXX_COMPILER=${MY_CXX} -DBUILD_SHARED_LIBS=$1 -DCMAKE_BUILD_TYPE=$2 >${LOG_DIRECTORY}/Minuit2-config-log 2>&1 &&
echo -e "- Configure Minuit2 standalone [${GREEN}done${NC}]" ||
{
echo -e "- Configure Minuit2 standalone [${RED}Error${NC}]"
exit
}
echo -ne "- Compile Minuit2 standalone ... "\\r
make VERBOSE=1 -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/Minuit2-build-log 2>&1 &&
echo -e "- Compile Minuit2 standalone [${GREEN}done${NC}]" ||
{
echo -e "- Compile Minuit2 standalone [${RED}Error${NC}]"
exit
}
make install >${LOG_DIRECTORY}/Minuit2-install-log 2>&1 &&
echo -e "- Local install of Minuit2 standalone [${GREEN}done${NC}]" ||
{
echo -e "- Local install Minuit2 standalone [${RED}Error${NC}]"
exit
}
cd ${INSTALL_DIRECTORY}
clean_up >${LOG_DIRECTORY}/clean_up-log
export_str="export ${MY_OS_SHAREDLIB_PATH_VAR}=\"${INSTALL_DIRECTORY}/lib/build/Minuit2/lib:${INSTALL_DIRECTORY}/lib/build/galtoolslib-1.1.1006/lib:${INSTALL_DIRECTORY}/lib/build/boost_1_76_0/lib:${INSTALL_DIRECTORY}/lib/build/CLHEP-2.4.4.2/lib:${INSTALL_DIRECTORY}/lib/build/gsl-2.7/lib:${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/lib:${INSTALL_DIRECTORY}/lib/build/Healpix_3.50/auto/lib:${INSTALL_DIRECTORY}/lib/build/CCfits-2.6/lib:${INSTALL_DIRECTORY}/lib/build/wcslib-7.7/lib:${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/lib:\$${MY_OS_SHAREDLIB_PATH_VAR}\""
if [ -d "${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/lib64" ]; then
export_str="export ${MY_OS_SHAREDLIB_PATH_VAR}=\"${INSTALL_DIRECTORY}/lib/build/Minuit2/lib:${INSTALL_DIRECTORY}/lib/build/galtoolslib-1.1.1006/lib:${INSTALL_DIRECTORY}/lib/build/boost_1_76_0/lib:${INSTALL_DIRECTORY}/lib/build/CLHEP-2.4.4.2/lib:${INSTALL_DIRECTORY}/lib/build/gsl-2.7/lib:${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/lib64:${INSTALL_DIRECTORY}/lib/build/Healpix_3.50/auto/lib:${INSTALL_DIRECTORY}/lib/build/CCfits-2.6/lib:${INSTALL_DIRECTORY}/lib/build/wcslib-7.7/lib:${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/lib:\$${MY_OS_SHAREDLIB_PATH_VAR}\""
fi
if ! grep -q "${export_str}" ${HOME}/${MY_RC_FILE}; then
echo "${export_str}" >>${HOME}/${MY_RC_FILE}
echo -e "- Update ${MY_RC_FILE} [${GREEN}done${NC}]"
fi
source ~/${MY_RC_FILE}
}
function clean_rc() {
export_str="export PATH=\"${INSTALL_DIRECTORY}/bin:"'$PATH'"\""
if grep -q "${export_str}" ${HOME}/${MY_RC_FILE}; then
sed -i.bak "/${export_str//\//\\/}/d" ${HOME}/${MY_RC_FILE}
fi
export_str="export ${MY_OS_SHAREDLIB_PATH_VAR}=\"${INSTALL_DIRECTORY}/lib/build/Minuit2/lib:${INSTALL_DIRECTORY}/lib/build/galtoolslib-1.1.1006/lib:${INSTALL_DIRECTORY}/lib/build/boost_1_76_0/lib:${INSTALL_DIRECTORY}/lib/build/CLHEP-2.4.4.2/lib:${INSTALL_DIRECTORY}/lib/build/gsl-2.7/lib:${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/lib:${INSTALL_DIRECTORY}/lib/build/Healpix_3.50/auto/lib:${INSTALL_DIRECTORY}/lib/build/CCfits-2.6/lib:${INSTALL_DIRECTORY}/lib/build/wcslib-7.7/lib:${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/lib:\$${MY_OS_SHAREDLIB_PATH_VAR}\""
if [ -d "${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/lib64" ]; then
export_str="export ${MY_OS_SHAREDLIB_PATH_VAR}=\"${INSTALL_DIRECTORY}/lib/build/Minuit2/lib:${INSTALL_DIRECTORY}/lib/build/galtoolslib-1.1.1006/lib:${INSTALL_DIRECTORY}/lib/build/boost_1_76_0/lib:${INSTALL_DIRECTORY}/lib/build/CLHEP-2.4.4.2/lib:${INSTALL_DIRECTORY}/lib/build/gsl-2.7/lib:${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/lib64:${INSTALL_DIRECTORY}/lib/build/Healpix_3.50/auto/lib:${INSTALL_DIRECTORY}/lib/build/CCfits-2.6/lib:${INSTALL_DIRECTORY}/lib/build/wcslib-7.7/lib:${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/lib:\$${MY_OS_SHAREDLIB_PATH_VAR}\""
fi
if grep -q "${export_str}" ${HOME}/${MY_RC_FILE}; then
sed -i.bak "/${export_str//\//\\/}/d" ${HOME}/${MY_RC_FILE}
fi
}
function install_galprop() {
initial_check
echo -e "${PC}--- Install GALPROP ---${NC}"
if [ ! -d "build" ]; then
mkdir "build"
fi
cd "build"
echo -ne "Configure GALPROP ... "\\r
${MY_CMAKE} .. -DCMAKE_INSTALL_PREFIX=${INSTALL_DIRECTORY}/GALPROP-57.0.3032 -DCMAKE_CXX_COMPILER=${MY_CXX} -DCMAKE_CXX_FLAGS=${MY_CXX_FLAGS} -DCMAKE_C_COMPILER=${MY_CC} -DCMAKE_Fortran_COMPILER=${MY_FC} -DCMAKE_Fortran_FLAGS=${MY_FC_FLAGS} -DBUILD_SHARED_LIBS=$1 -DCMAKE_BUILD_TYPE=$2 -Dgaltoolslib_DIR=${INSTALL_DIRECTORY}/lib/build/galtoolslib-1.1.1006/lib/CMake -DEIGEN3_DIR=${INSTALL_DIRECTORY}/lib/build/eigen-3.4.0/share/eigen3/cmake -DMinuit2_DIR=${INSTALL_DIRECTORY}/lib/build/Minuit2/lib/cmake/Minuit2 >${LOG_DIRECTORY}/galprop-config-log 2>&1 &&
echo -e "- Configure GALPROP [${GREEN}done${NC}]" ||
{
echo -e "- Configure GALPROP [${RED}Error${NC}]"
exit
}
echo -ne "- Compile GALPROP ... "\\r
make VERBOSE=1 -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/galprop-build-log 2>&1 &&
echo -e "- Compile GALPROP [${GREEN}done${NC}]" ||
{
echo -e "- Compile GALPROP [${RED}Error${NC}]"
exit
}
make install >${LOG_DIRECTORY}/galprop-install-log 2>&1 &&
echo -e "- Local install of GALPROP [${GREEN}done${NC}]" ||
{
echo -e "- Local install GALPROP [${RED}Error${NC}]"
exit
}
}
function usage() {
echo "Usage: ./install_galprop.sh [-h] [-n]"
echo ""
echo "Install GALPROP on your system."
echo ""
echo "Optional arguments:"
echo "-h show this help message only."
echo "-n new installation: compile support libraries and GALPROP."
echo "-r clean and compile GALPROP with optimisation."
echo "-d clean and compile GALPROP in debug mode."
echo "-C clean all builds (support libraries and GALPROP)."
echo "-D delete GALPROP and support libraries from system."
echo "-u update existing GALPROP build."
exit
}
while getopts "hoduCD" OPT; do
case $OPT in
C)
echo -e "${TC}------ Clean support libraries and GALPROP build ------${NC}"
cd ${INSTALL_DIRECTORY}
delete_build >${LOG_DIRECTORY}/delete-build-log 2>&1
clean_rc
exit
;;
D)
printf "%s\n" "Do you really want to delete your GALPROP installation [y/N]?"
read really_delete
case ${really_delete:=n} in
[yY]*)
echo -e "${TC}------ delete GALPROP ------${NC}"
clean_rc >${LOG_DIRECTORY}/clean_rc-log 2>&1
cd ${INSTALL_DIRECTORY}/../
rm -rv ${INSTALL_DIRECTORY}
exit
;;
*)
exit
;;
esac
;;
h)
usage
;;
o)
echo -e "${TC}------ Recompile GALPROP in optimised mode ------${NC}"
cd ${INSTALL_DIRECTORY}
delete_build >${LOG_DIRECTORY}/delete-build-log 2>&1
install_support_libraries "ON" "RelWithDebInfo"
install_galprop "ON" "RelWithDebInfo"
exit
;;
d)
echo -e "${TC}------ Recompile GALPROP in debug mode ------${NC}"
cd ${INSTALL_DIRECTORY}
delete_build >${LOG_DIRECTORY}/delete-build-log 2>&1
install_support_libraries "ON" "Debug"
install_galprop "ON" "Debug"
exit
;;
u)
echo -e "${TC}------ Update GALPROP executable ------${NC}"
cd ${INSTALL_DIRECTORY}
install_galprop "ON" "RelWithDebInfo"
exit
;;
\?)
usage
;;
esac
done
## Installation
echo -e "${TC}------ Installation of GALPROP cosmic ray propagation code ------${NC}"
cd ${INSTALL_DIRECTORY}
chmod +x *.sh
## Test for existing installation
if [ -e "${INSTALL_DIRECTORY}/GALPROP-57.0.3032/bin/galprop" ]; then
echo -e "GALPROP executable found (use -o or -u to recompile) [${GREEN}done${NC}]"
else
install_support_libraries "ON" "RelWithDebInfo"
install_galprop "ON" "RelWithDebInfo"
echo -e "${TC}-> Installation of GALPROP cosmic ray propagation code ${NC}[${GREEN}done${NC}]"
echo -e "${TC} Source ~/${MY_RC_FILE} to set libraries for current shell to run GALPROP${NC}"
fi
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