gcsfs-datalab-abafar-demo.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "id": "c4706a64-fb36-410a-8a65-042540798b73",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "'0.7.2'"
      ]
     },
     "execution_count": 1,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "import gcsfs\n",
    "gcsfs.__version__"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "id": "99178f0c-d9bf-49e9-99d8-926c8ae94b2d",
   "metadata": {},
   "outputs": [],
   "source": [
    "# one-time browser authentication, will save token to ~/.gcs_tokens file\n",
    "# gcsfs.core.client_config['installed']['client_id'] = '160816776314-7h1p2h6bqhe77vs1su4rr22fblso9dre.apps.googleusercontent.com'\n",
    "# gcsfs.core.client_config['installed']['client_secret'] = 'SrJUwD58yKgViyJtw-NP2sz8'\n",
    "# gcs_browser = gcsfs.GCSFileSystem(project='malariagen-jupyterhub', token='browser')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "id": "9253e241-c103-4b51-9c51-6244e69448eb",
   "metadata": {},
   "outputs": [],
   "source": [
    "gcs_cache = gcsfs.GCSFileSystem(project='malariagen-jupyterhub', token='cache')\n",
    "gcs = gcsfs.GCSFileSystem(project='malariagen-jupyterhub', token=gcs_cache.credentials, cache_timeout=0)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "id": "f66eb70f-3d63-4bbf-8153-38318dd8ff56",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['vo_agam_production/accessibility_maps',\n",
       " 'vo_agam_production/accessibility_summary_stats',\n",
       " 'vo_agam_production/ag3_data_paper',\n",
       " 'vo_agam_production/ancestry_informative_marker_defs',\n",
       " 'vo_agam_production/cnv',\n",
       " 'vo_agam_production/crosses_analysis',\n",
       " 'vo_agam_production/crosses_stats',\n",
       " 'vo_agam_production/machine_learning',\n",
       " 'vo_agam_production/phasing-validation',\n",
       " 'vo_agam_production/resources',\n",
       " 'vo_agam_production/test.txt',\n",
       " 'vo_agam_production/test_locks',\n",
       " 'vo_agam_production/tracking',\n",
       " 'vo_agam_production/v3.x']"
      ]
     },
     "execution_count": 4,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "gcs.ls(\"vo_agam_production\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "id": "f0d2c99b-c2f8-47fc-bbac-204cb7c2f1df",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "hello world again\n",
      "\n"
     ]
    }
   ],
   "source": [
    "with gcs.open(\"vo_agam_production/test.txt\", mode=\"rt\") as f:\n",
    "    print(f.read())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "id": "857ec04b-2879-4e3c-8527-1c009bd4665a",
   "metadata": {},
   "outputs": [],
   "source": [
    "with gcs.open(\"vo_agam_production/test.txt\", mode=\"wt\") as f:\n",
    "    print(\"alimanfoo was here\", file=f)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "44b535d5-e1f2-463a-8fb0-6e7f479905b2",
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
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   "codemirror_mode": {
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